CsaV3_1G007640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G007640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4859899 .. 4860195 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATCGCCGACGGAGGAGAAAAACCGAGCAGGAAGAGAGGAGGGGTCGATGATAAGTGGAAGAAGCAGAACCCGCGTAGGGTTTTTCTTTTTTCTCTTTTCTTAATCTACTTAGACAACTTTTACCCTCAACTTTTAACTTCGTTAAAATTACTTTTTACTTGGGAACTTTTTCAAATTCTACCTTAA

mRNA sequence

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATCGCCGACGGAGGAGAAAAACCGAGCAGGAAGAGAGGAGGGGTCGATGATAAGTGGAAGAAGCAGAACCCGCGTAGGGTTTTTCTTTTTTCTCTTTTCTTAATCTACTTAGACAACTTTTACCCTCAACTTTTAACTTCGTTAAAATTACTTTTTACTTGGGAACTTTTTCAAATTCTACCTTAA

Coding sequence (CDS)

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATCGCCGACGGAGGAGAAAAACCGAGCAGGAAGAGAGGAGGGGTCGATGATAAGTGGAAGAAGCAGAACCCGCGTAGGGTTTTTCTTTTTTCTCTTTTCTTAATCTACTTAGACAACTTTTACCCTCAACTTTTAACTTCGTTAAAATTACTTTTTACTTGGGAACTTTTTCAAATTCTACCTTAA

Protein sequence

MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQNPRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP
Homology
[Close]
BLAST of CsaV3_1G007640 vs. NCBI nr
Match: KGN64226.1 (hypothetical protein Csa_1G043285 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP 99
          PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP
Sbjct: 61 PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP 98

[Close]
BLAST of CsaV3_1G007640 vs. TrEMBL
Match: tr|A0A0A0LW09|A0A0A0LW09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043285 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP 99
          PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP
Sbjct: 61 PRRVFLFSLFLIYLDNFYPQLLTSLKLLFTWELFQILP 98

The following BLAST results are available for this feature:
BLAST of CsaV3_1G007640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64226.12.6e-47100.00hypothetical protein Csa_1G043285 [Cucumis sativus][more]
BLAST of CsaV3_1G007640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G007640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G007640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LW09|A0A0A0LW09_CUCSA1.7e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043285 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007640.1CsaV3_1G007640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G007640CSPI01G07670Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G007640Silver-seed gourdcarcucB0529
CsaV3_1G007640Cucumber (Gy14) v2cgybcucB002
CsaV3_1G007640Cucumber (Gy14) v1cgycucB163
CsaV3_1G007640Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G007640Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G007640Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G007640Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G007640Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G007640Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G007640Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G007640Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G007640Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G007640Watermelon (Charleston Gray)cucwcgB023
CsaV3_1G007640Watermelon (97103) v1cucwmB048
CsaV3_1G007640Watermelon (97103) v2cucwmbB009
CsaV3_1G007640Wax gourdcucwgoB031