CSPI01G07670.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G07670.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 4869542 .. 4870780 (+)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGTTTTTCTTTTTTCCCTTTTCTTAATCTACTTAGACAACTTTTACCCTCAACTTTTAACTTCGTTAAAATTACTTTTTACTTGGGAACTTTTTCAAATTCTACCTTAATAGTAATGAATTTTTTACCTTCAAATAGTATTTCTCATTGTTGTTGCACAAATCCATGTAATATCGTGCCACACTAATATTTAAGTAAGCAAGTATAACCATGTTGAAAAATGTAAAACCAATCCTAACAAAAATTTATTGGCTAAGTATTTCATATGATTTCAATCATTATTTTTTTTATTAGAATTCGTTTGCATTTCTATTTAAGTTTCTTATTTCTTTTCATTCCATTTGTCAATATAACTTTTTAATACGGTAAAGATGAGGGATCAAACATTCCACTTCTAGAATGAAAGATCATGTCAATTATTGTTGAACAAATTTTACTTTTGTATTGACTATGTATTTAAAACTGATAGTTGACTAGTACCGTTAAACTTGTTATGCAACAACAATGATATGTCAATGATAGCCATGTCACGTATAGAATCCTAAAAATTGAAGTTTACCGTAGATATTATTACAATTGTCACAATTAAATGAAGGAAAACAAATTACATTCACTTTTTTTTATCATGAAACATCATCAAATATAATAAAATGAACAAAAGATGTTTACAAAATAGAACCTAGTGAAATTTTACTCTACCTTGAACATTTTAAGCAATTTTACAATTTACATTTATTATTTTGCACTTTTTTCTATAATATTCTCATCACTTCTATTATATCACCAAATTGGTTTCTAAAAAGCAGAATTTGAAATAGAAAATGGGCCTTGGACCTTGGGCCTAATTAGTGTATTGCATAACGGATCAGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA

mRNA sequence

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA

Coding sequence (CDS)

ATGTTGAGAGTGACGAAGAGAAGCGGAGAGATAAGAAAACACGTGGGTGTAGTGCGCGACGAAGACCTGCCGGTTTACGTGGCTGTCACCGCTGCTCGTGGGTTTGCTGCGATAGCCGACGGAGGAGAAAAACCGAGCAGGCAGAGAGGAGGGGTCGACGATAAGTGGAAGAAGCAGAACCCGCGTAGGGCAAATGGGCCACAACATCGGAAACAGGTAAGACGAAAGGAAGGAAAGAAAATGGGGGAAATGCATCAAACGCTGGATAACTTCGGAATGTATCTACACTGTATATCTACACATCGTCCGAAACGGAACAGCTCCAAAACGTCCAAACAAATCCAAAGCAAGGGAAAAGATAAGAGAGTGTGA

Homology

[Close]

BLAST of CSPI01G07670.1 vs. TrEMBL
Match: A0A0A0LW09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043285 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRQRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSR+RGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRR 64
          PRR
Sbjct: 61 PRR 63

[Close]

BLAST of CSPI01G07670.1 vs. NCBI nr
Match: gi|700209130|gb|KGN64226.1| (hypothetical protein Csa_1G043285 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRQRGGVDDKWKKQN 60
          MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSR+RGGVDDKWKKQN
Sbjct: 1  MLRVTKRSGEIRKHVGVVRDEDLPVYVAVTAARGFAAIADGGEKPSRKRGGVDDKWKKQN 60

Query: 61 PRR 64
          PRR
Sbjct: 61 PRR 63

The following BLAST results are available for this feature:

BLAST of CSPI01G07670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G07670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW09_CUCSA	4.3e-26	98.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043285 PE=4 SV=1	[more]

BLAST of CSPI01G07670.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G07670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209130\|gb\|KGN64226.1\|	6.2e-26	98.41	hypothetical protein Csa_1G043285 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G07670	CSPI01G07670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G07670.1	CSPI01G07670.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G07670.1.cds1	CSPI01G07670.1.cds1	CDS
CSPI01G07670.1.cds2	CSPI01G07670.1.cds2	CDS