CSPI01G02960 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G02960
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 1877392 .. 1878413 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGTTAAAGGAATATTCTTCTTCTTCTTCTTCTTTTTCTTGATTTTCTCTGTTTTTCAGTACTAAATGGGATCCGTTCTTCATTCTTTTATCTTCTTTTGAGTTTTTGACAAAGTCACATGGACATTTGGACAGTTTAAGACCCACCCACATACGCATTCCACATGGATGCCTCAGATATGGCCGATTAGATTGGGGCACATTTGATCTGACCCACTAGTTACATTTTTTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCGTCTTGTTATTGTTTTATTTTTGTTGACCAGTCTTCTCTGATTGTTATGCAATTCATGCTTCTTCTACCTGTTTTTATACACACTTATAGTAATACATTTAATTCTAGGACGCCGGGTGAAAATTCCCATTACCGGTTTTCTCTTTGATTCTTACCTTTCCCATTATAAGTAATTGCTGATACTCTGAATGTTCTGTATTTGCCTTGAAAATCAGATGATTCTAGTTTCTGGGTCTCTTCTTCTACTTGGTTTGATTCTCTAGAGGTGTCCTTTTTCGTTTGTTGCTTTGAAGTATTATGATATTGGGAGTATTCCATGGCATACCCAATTGGTAAATTTTGTGGGATTAAGATTTGCATTGCAAAACCAGTGTGGTGATCTGAGAGAGACTGGTGTTTTGAGAAGTAATTAGCTGGAAAAAGATCTGTTGATTTAATATATGGTATAAACAAGGAAGTATTTCAAATTTTATTATATACCAGTTTCTTGAGCAGAGTTGAAAAGGCAAATTACAGCCTTTATTCTTTCCATTTTGAAACTGATAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA

mRNA sequence

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA

Coding sequence (CDS)

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA
Homology
[Close]
BLAST of CSPI01G02960 vs. TrEMBL
Match: A0A0A0LUP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGERRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGE RLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

[Close]
BLAST of CSPI01G02960 vs. NCBI nr
Match: gi|700208640|gb|KGN63736.1| (hypothetical protein Csa_1G014330 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGERRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGE RLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

The following BLAST results are available for this feature:
BLAST of CSPI01G02960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G02960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUP0_CUCSA5.7e-3498.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1[more]
BLAST of CSPI01G02960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G02960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208640|gb|KGN63736.1|8.1e-3498.63hypothetical protein Csa_1G014330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G02960.1CSPI01G02960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G02960Csa1G014330Cucumber (Chinese Long) v2cpicuB000
CSPI01G02960CsaV3_1G003010Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G02960Cucumber (Chinese Long) v2cpicuB005
CSPI01G02960Melon (DHL92) v3.5.1cpimeB055
CSPI01G02960Melon (DHL92) v3.5.1cpimeB026
CSPI01G02960Watermelon (Charleston Gray)cpiwcgB060
CSPI01G02960Watermelon (Charleston Gray)cpiwcgB083
CSPI01G02960Watermelon (97103) v1cpiwmB067
CSPI01G02960Watermelon (97103) v1cpiwmB099
CSPI01G02960Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G02960Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G02960Cucurbita pepo (Zucchini)cpecpiB512
CSPI01G02960Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G02960Bottle gourd (USVL1VR-Ls)cpilsiB024
CSPI01G02960Bottle gourd (USVL1VR-Ls)cpilsiB070
CSPI01G02960Melon (DHL92) v3.6.1cpimedB028
CSPI01G02960Melon (DHL92) v3.6.1cpimedB049
CSPI01G02960Cucumber (Gy14) v2cgybcpiB001
CSPI01G02960Cucumber (Gy14) v2cgybcpiB004
CSPI01G02960Silver-seed gourdcarcpiB0420
CSPI01G02960Silver-seed gourdcarcpiB0497
CSPI01G02960Silver-seed gourdcarcpiB0550
CSPI01G02960Silver-seed gourdcarcpiB0628
CSPI01G02960Cucumber (Chinese Long) v3cpicucB003
CSPI01G02960Watermelon (97103) v2cpiwmbB056
CSPI01G02960Watermelon (97103) v2cpiwmbB079
CSPI01G02960Wax gourdcpiwgoB053
CSPI01G02960Wax gourdcpiwgoB114
CSPI01G02960Wild cucumber (PI 183967)cpicpiB000
CSPI01G02960Cucumber (Gy14) v1cgycpiB138
CSPI01G02960Cucumber (Gy14) v1cgycpiB310
CSPI01G02960Cucurbita maxima (Rimu)cmacpiB070
CSPI01G02960Cucurbita maxima (Rimu)cmacpiB086
CSPI01G02960Cucurbita maxima (Rimu)cmacpiB226
CSPI01G02960Cucurbita maxima (Rimu)cmacpiB397
CSPI01G02960Cucurbita moschata (Rifu)cmocpiB062
CSPI01G02960Cucurbita moschata (Rifu)cmocpiB079
CSPI01G02960Cucurbita moschata (Rifu)cmocpiB388