CSPI01G02960.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI01G02960.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 1877392 .. 1878413 (-)
Sequence length219
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGTTAAAGGAATATTCTTCTTCTTCTTCTTCTTTTTCTTGATTTTCTCTGTTTTTCAGTACTAAATGGGATCCGTTCTTCATTCTTTTATCTTCTTTTGAGTTTTTGACAAAGTCACATGGACATTTGGACAGTTTAAGACCCACCCACATACGCATTCCACATGGATGCCTCAGATATGGCCGATTAGATTGGGGCACATTTGATCTGACCCACTAGTTACATTTTTTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCGTCTTGTTATTGTTTTATTTTTGTTGACCAGTCTTCTCTGATTGTTATGCAATTCATGCTTCTTCTACCTGTTTTTATACACACTTATAGTAATACATTTAATTCTAGGACGCCGGGTGAAAATTCCCATTACCGGTTTTCTCTTTGATTCTTACCTTTCCCATTATAAGTAATTGCTGATACTCTGAATGTTCTGTATTTGCCTTGAAAATCAGATGATTCTAGTTTCTGGGTCTCTTCTTCTACTTGGTTTGATTCTCTAGAGGTGTCCTTTTTCGTTTGTTGCTTTGAAGTATTATGATATTGGGAGTATTCCATGGCATACCCAATTGGTAAATTTTGTGGGATTAAGATTTGCATTGCAAAACCAGTGTGGTGATCTGAGAGAGACTGGTGTTTTGAGAAGTAATTAGCTGGAAAAAGATCTGTTGATTTAATATATGGTATAAACAAGGAAGTATTTCAAATTTTATTATATACCAGTTTCTTGAGCAGAGTTGAAAAGGCAAATTACAGCCTTTATTCTTTCCATTTTGAAACTGATAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA

mRNA sequence

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA

Coding sequence (CDS)

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCGTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAA
Homology
[Close]
BLAST of CSPI01G02960.1 vs. TrEMBL
Match: A0A0A0LUP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGERRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGE RLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

[Close]
BLAST of CSPI01G02960.1 vs. NCBI nr
Match: gi|700208640|gb|KGN63736.1| (hypothetical protein Csa_1G014330 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.1e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGERRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGE RLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

The following BLAST results are available for this feature:
BLAST of CSPI01G02960.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G02960.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUP0_CUCSA5.7e-3498.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1[more]
BLAST of CSPI01G02960.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G02960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208640|gb|KGN63736.1|8.1e-3498.63hypothetical protein Csa_1G014330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G02960CSPI01G02960gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G02960.1CSPI01G02960.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G02960.mrna.cds.2CSPI01G02960.mrna.cds.2CDS
CSPI01G02960.mrna.cds.1CSPI01G02960.mrna.cds.1CDS