Csa1G014330 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G014330
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1861326 .. 1862348 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGTTAAAGGAATATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCTCTGTTTTTCAGTACTAAATGGGATCCGTTCTTCATTCTTTTATCTTCTTTTGAGTTTTTGACAAAGTCACATGGACATTTGGACAGTTTAAGACCCACCCACATACGCATTCCACATGGATGCCTCAGATATGGCCGATTAGATTGGGGCACATTTGATCTGACCCACTAGTTACATTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTTGTTATTGTTTTATTTTTGTTGACCAGTCTTCTCTGATTGTTATGCAATTCATGCTTCTTCTACCTGTTTTTATACTCACTTATAGTAATACATTTAATTCTAGGACGCCGGGTGAAAATTCCCATTACCGGTTTTCTCTTTGATTCTTACCTTTCCCATTATAAGTAATTGCTGATACTCTGAATGTTCTGTATTTGCCTTGAAAATCAGATGATTCTAGTTTCTGGGTCTCTTCTTCTACTTGGTTTGATTCTCTAGAGGTGTCCTTTTTCGTTTGTTGCTTTGAAGTATTATGATATTGGGAGTATTCCATGGCATACCCAATTGGTAAATTTTGTGGGATTAAGATTTGCATTGCAAAACCAGTGTGGTGATCTGAGAGAGACTGGTGTTTTGAGAAGTAATTAGCTGGAAAAAGATCTGTTGATTTAATATATGGTATAAACAAGGAAGTATTTCAAATTTTATTATATACCAGTTTCTTGAGCAGAGTTGAAAAGGCAAATTACAGCCTTTATTCTTTCCATTTTGAAACTGATAGGGGAGCCTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAATGA

mRNA sequence

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCCTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAATGA

Coding sequence (CDS)

ATGGAAAGCAAAAGCTCAGATCTTCACTGTACTGTTGGAATTCTCCTCAAAAACCCACAATCTGATCCGTTTGAAGAACCTCAAGGAGAAGGGGAGCCTAGATTATGCTTAGACTTCTCATATTTAAGGCGAGGCAAGAAGAAAGAGAAGGAATTCAGATTCTTGTTGAACACTCCAGTCCCAGAAACTGATGTGTTGGTTAATATTCTGGGATCACAATGA

Protein sequence

MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPVPETDVLVNILGSQ*
Homology
[Close]
BLAST of Csa1G014330 vs. TrEMBL
Match: A0A0A0LUP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

[Close]
BLAST of Csa1G014330 vs. NCBI nr
Match: gi|700208640|gb|KGN63736.1| (hypothetical protein Csa_1G014330 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60
          MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV
Sbjct: 1  MESKSSDLHCTVGILLKNPQSDPFEEPQGEGEPRLCLDFSYLRRGKKKEKEFRFLLNTPV 60

Query: 61 PETDVLVNILGSQ 74
          PETDVLVNILGSQ
Sbjct: 61 PETDVLVNILGSQ 73

The following BLAST results are available for this feature:
BLAST of Csa1G014330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUP0_CUCSA2.0e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014330 PE=4 SV=1[more]
BLAST of Csa1G014330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208640|gb|KGN63736.1|2.8e-34100.00hypothetical protein Csa_1G014330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G014330.1Csa1G014330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G014330CSPI01G02960Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G014330Cucumber (Gy14) v2cgybcuB001
Csa1G014330Cucumber (Gy14) v2cgybcuB005
Csa1G014330Melon (DHL92) v3.6.1cumedB026
Csa1G014330Melon (DHL92) v3.6.1cumedB046
Csa1G014330Silver-seed gourdcarcuB0416
Csa1G014330Silver-seed gourdcarcuB0491
Csa1G014330Silver-seed gourdcarcuB0543
Csa1G014330Silver-seed gourdcarcuB0622
Csa1G014330Watermelon (97103) v2cuwmbB055
Csa1G014330Watermelon (97103) v2cuwmbB078
Csa1G014330Wax gourdcuwgoB054
Csa1G014330Wax gourdcuwgoB112
Csa1G014330Cucumber (Chinese Long) v2cucuB000
Csa1G014330Watermelon (97103) v1cuwmB094
Csa1G014330Cucumber (Gy14) v1cgycuB138
Csa1G014330Cucumber (Gy14) v1cgycuB299
Csa1G014330Cucurbita maxima (Rimu)cmacuB070
Csa1G014330Cucurbita maxima (Rimu)cmacuB087
Csa1G014330Cucurbita maxima (Rimu)cmacuB221
Csa1G014330Cucurbita maxima (Rimu)cmacuB393
Csa1G014330Cucurbita moschata (Rifu)cmocuB076
Csa1G014330Cucurbita moschata (Rifu)cmocuB060
Csa1G014330Cucurbita moschata (Rifu)cmocuB210
Csa1G014330Cucurbita moschata (Rifu)cmocuB385
Csa1G014330Melon (DHL92) v3.5.1cumeB030
Csa1G014330Melon (DHL92) v3.5.1cumeB054
Csa1G014330Watermelon (Charleston Gray)cuwcgB058
Csa1G014330Watermelon (Charleston Gray)cuwcgB081
Csa1G014330Watermelon (97103) v1cuwmB063
Csa1G014330Cucurbita pepo (Zucchini)cpecuB033
Csa1G014330Cucurbita pepo (Zucchini)cpecuB352
Csa1G014330Cucurbita pepo (Zucchini)cpecuB509
Csa1G014330Cucurbita pepo (Zucchini)cpecuB653
Csa1G014330Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G014330Bottle gourd (USVL1VR-Ls)culsiB025