CSPI01G00540 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G00540
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	HCP family protein with MYND-type zinc finger protein
Location	Chr1 : 304517 .. 306098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAAAAGAGATTAAATAAAATATCAACAACAAAAAAACAAAGAGAGAAAAGATTTCTAAAAAAGAGGAAGCAGAACGGTTACCATTTCCGATTTCCCACACCAAGAGAACGCCGCCGTACCACACTCCTAAATCTCTACTCTCAACGCATGTAATCCCCAAACTCTTCAACAATGATTTCCTCCAAGAGGCCAAGAACATGCCGTAATTTCACCGTAGATTCTGATCTATTCGATGTCTTGCCCGACGATCTCCTTATACATCTCCTCTCTCGCCTTGCCGCCTCCGCCTCCTCCCCTTCTGACCTCCTCAACCTTCTCTTGACGTAATTACATATATGATATATCCCTGTTTTCGTTTTCTTTTTCTTTTTTACTCTGTTTTTTTTTTTTTTTTTTTGGTTTTGTAAATTTCTCTTCTTTTTTGGGATGATTTTGCAGATGTAAGAGGTTGAATCGCTTGGTTCTTAATCCTATGGTTTTGTGTAAAGCCGGACCGAAGGCGTTCGCAGTAAGAATGCGAAACTGGTCTGATTCCGCTCACCGATTTCTGAAACGCTGCGTCGATGCCGGTAATTCGGAAGCGAGTTACACGCTTGGAATGGTTTGTTTTTTTTGAAAAATTTGAAGAAATTGTTACTCTGTATTGGGTTTGAGCGCGGATTGATGATATCTGTATTTTTTTTCCTTTGTAGATCCGATTTTATTGTTTGAGGAATCGAGGGAGTGGAGCTTCCTTAATGGCGAAAGCAGCGATTAAATCTCACGCTCCGGCGCTATACTCACTCGCCGTCATTCAATTCAACGGCAGCGGTGGGTCTAAAAGCGACAAGGATCTTCAGGCAGGCGTAGCGCTCTGTGCTCGAGCCGCTTTTCTAGGCCATGTGGACGCACTTCGCGAACTCGGCCACTGCCTTCAAGATGGTTACGGTGTGAGACAGAACTCCGACGAAGGCCGCCGCCTCCTCGTCCAAGCCAACGCCCGTGAGCTTGCTACGGTTTTACTCTCTTCCTCGAGTACATGGCAACAACAGCGACACAACCAGTCCGGCAACCTCCCTGATTTGACAGCGACTCGTTGTTCGTTGCTGAGTGATTTCGGTTGTAACGTTCCAGCACCAGAGCCACATCCGGTGAACCTGTTTTTGAGAGAGTGGTTCGAGTCGGAAGGTGAAGTGGCAGCGCGTGTGGGTCTGAGACTTTGTTCGCACAGTGGATGCGGTCGGGGTGAGACTCGGCCGCACGAGTTCCGACGGTGCTCAGTTTGTGGGACAGTAAATTACTGTTCAAGAGGATGCCAAGCGCAGGATTGGAAAGTCCGGCATAAAGAAGAGTGTACGACGGTGCACCGGTGGCGGGATGAGGATGCTAACAATGCCGGCGAGATGTTTGGTATTGTTGAAGAAGAAGTTGAGGACGCCAACAATATCGTGGGTATTGTATAAAATCGTAACGGCGCTGTAATTTTGTCTATTTATGGAGATAGATAATACTTTTTCTAATCTTTTAATTTTGAGTTTTGTTTTAACGATTTCTCTTTCTAACTTCGATCCACGTTTATTTATTCTATTCACCTAATTAC

mRNA sequence

ATGATTTCCTCCAAGAGGCCAAGAACATGCCGTAATTTCACCGTAGATTCTGATCTATTCGATGTCTTGCCCGACGATCTCCTTATACATCTCCTCTCTCGCCTTGCCGCCTCCGCCTCCTCCCCTTCTGACCTCCTCAACCTTCTCTTGACATGTAAGAGGTTGAATCGCTTGGTTCTTAATCCTATGGTTTTGTGTAAAGCCGGACCGAAGGCGTTCGCAGTAAGAATGCGAAACTGGTCTGATTCCGCTCACCGATTTCTGAAACGCTGCGTCGATGCCGGTAATTCGGAAGCGAGTTACACGCTTGGAATGATCCGATTTTATTGTTTGAGGAATCGAGGGAGTGGAGCTTCCTTAATGGCGAAAGCAGCGATTAAATCTCACGCTCCGGCGCTATACTCACTCGCCGTCATTCAATTCAACGGCAGCGGTGGGTCTAAAAGCGACAAGGATCTTCAGGCAGGCGTAGCGCTCTGTGCTCGAGCCGCTTTTCTAGGCCATGTGGACGCACTTCGCGAACTCGGCCACTGCCTTCAAGATGGTTACGGTGTGAGACAGAACTCCGACGAAGGCCGCCGCCTCCTCGTCCAAGCCAACGCCCGTGAGCTTGCTACGGTTTTACTCTCTTCCTCGAGTACATGGCAACAACAGCGACACAACCAGTCCGGCAACCTCCCTGATTTGACAGCGACTCGTTGTTCGTTGCTGAGTGATTTCGGTTGTAACGTTCCAGCACCAGAGCCACATCCGGTGAACCTGTTTTTGAGAGAGTGGTTCGAGTCGGAAGGTGAAGTGGCAGCGCGTGTGGGTCTGAGACTTTGTTCGCACAGTGGATGCGGTCGGGGTGAGACTCGGCCGCACGAGTTCCGACGGTGCTCAGTTTGTGGGACAGTAAATTACTGTTCAAGAGGATGCCAAGCGCAGGATTGGAAAGTCCGGCATAAAGAAGAGTGTACGACGGTGCACCGGTGGCGGGATGAGGATGCTAACAATGCCGGCGAGATGTTTGGTATTGTTGAAGAAGAAGTTGAGGACGCCAACAATATCGTGGGTATTGTATAA

Coding sequence (CDS)

ATGATTTCCTCCAAGAGGCCAAGAACATGCCGTAATTTCACCGTAGATTCTGATCTATTCGATGTCTTGCCCGACGATCTCCTTATACATCTCCTCTCTCGCCTTGCCGCCTCCGCCTCCTCCCCTTCTGACCTCCTCAACCTTCTCTTGACATGTAAGAGGTTGAATCGCTTGGTTCTTAATCCTATGGTTTTGTGTAAAGCCGGACCGAAGGCGTTCGCAGTAAGAATGCGAAACTGGTCTGATTCCGCTCACCGATTTCTGAAACGCTGCGTCGATGCCGGTAATTCGGAAGCGAGTTACACGCTTGGAATGATCCGATTTTATTGTTTGAGGAATCGAGGGAGTGGAGCTTCCTTAATGGCGAAAGCAGCGATTAAATCTCACGCTCCGGCGCTATACTCACTCGCCGTCATTCAATTCAACGGCAGCGGTGGGTCTAAAAGCGACAAGGATCTTCAGGCAGGCGTAGCGCTCTGTGCTCGAGCCGCTTTTCTAGGCCATGTGGACGCACTTCGCGAACTCGGCCACTGCCTTCAAGATGGTTACGGTGTGAGACAGAACTCCGACGAAGGCCGCCGCCTCCTCGTCCAAGCCAACGCCCGTGAGCTTGCTACGGTTTTACTCTCTTCCTCGAGTACATGGCAACAACAGCGACACAACCAGTCCGGCAACCTCCCTGATTTGACAGCGACTCGTTGTTCGTTGCTGAGTGATTTCGGTTGTAACGTTCCAGCACCAGAGCCACATCCGGTGAACCTGTTTTTGAGAGAGTGGTTCGAGTCGGAAGGTGAAGTGGCAGCGCGTGTGGGTCTGAGACTTTGTTCGCACAGTGGATGCGGTCGGGGTGAGACTCGGCCGCACGAGTTCCGACGGTGCTCAGTTTGTGGGACAGTAAATTACTGTTCAAGAGGATGCCAAGCGCAGGATTGGAAAGTCCGGCATAAAGAAGAGTGTACGACGGTGCACCGGTGGCGGGATGAGGATGCTAACAATGCCGGCGAGATGTTTGGTATTGTTGAAGAAGAAGTTGAGGACGCCAACAATATCGTGGGTATTGTATAA

Homology

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BLAST of CSPI01G00540 vs. Swiss-Prot
Match: FB76_ARATH (F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 5.4e-123
Identity = 216/326 (66.26%), Postives = 248/326 (76.07%), Query Frame = 1


Query: 14  TVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVLNPMVLCKAGPKAF 73
           T  +DL D +PDDL+I +L +L +++  P+D +N+LLTCKRL  L +NP+VL +  PKA 
Sbjct: 38  TTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAI 97

Query: 74  AVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPAL 133
           AV+  NWS+ +HRFLKRCVDAG+ EA YTLGMIRFYCL+NRG+GASLMAKAAI SHAPAL
Sbjct: 98  AVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPAL 157

Query: 134 YSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNSDEGR 193
           YSLAVIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQDGYGV QN  EGR
Sbjct: 158 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGR 217

Query: 194 RLLVQANARELATVL---LSSSSTWQQQRHNQSGNLPDLTATRCSLLSDFGCNVPAPEPH 253
           R LVQANARELA VL   + + STW          +P+     C LLSDFGCNVPAPE H
Sbjct: 218 RFLVQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETH 277

Query: 254 PVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVNYCSRGCQAQD 313
           P N FL +WF   G      GLRLCSH+GCGR ETR HEFRRCSVCG VNYCSR CQA D
Sbjct: 278 PANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALD 337

Query: 314 WKVRHKEECTTVHRWRDEDANNAGEM 337
           WK+RHK +C  V RW +E     G +
Sbjct: 338 WKLRHKMDCAPVQRWLEEGDGGEGNV 363

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BLAST of CSPI01G00540 vs. Swiss-Prot
Match: FB342_ARATH (F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 8.3e-108
Identity = 204/314 (64.97%), Postives = 239/314 (76.11%), Query Frame = 1


Query: 12  NFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVLNPMVLCKAGPK 71
           N TV++  F+ L DDL+I +L +LA SASSPSD L +L TCKRLNRL L+P+VL KAG +
Sbjct: 15  NNTVNNH-FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQ 74

Query: 72  AFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAP 131
             AV    WSDS+H+FLK CV+AGN +ASY+LGMIRFYCL+N  SGASLMAKAAIKSHAP
Sbjct: 75  TLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAP 134

Query: 132 ALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNSDE 191
           ALYSL+VIQFNGSGGSK+DK+L+AGVALCAR+A+LGHVDALRELGHCLQDGYGV ++  E
Sbjct: 135 ALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSE 194

Query: 192 GRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDFGCNVPAPEPHP 251
           GRRLL+QANARELA  L S  S    +  +++  L DL+             VP  E HP
Sbjct: 195 GRRLLIQANARELACSLRSYLSL---KSGDENETLTDLSV------------VPVQEIHP 254

Query: 252 VNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVNYCSRGCQAQDW 311
           VN FL+EWF S G V    GLR+CSH GCGR ETR HEFRRCSVCG VNYCSRGCQA DW
Sbjct: 255 VNRFLKEWF-SSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDW 311

Query: 312 KVRHKEECTTVHRW 326
           + +HK ECT +  W
Sbjct: 315 RAKHKVECTPLDLW 311

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BLAST of CSPI01G00540 vs. TrEMBL
Match: A0A0A0LNX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002030 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 1.9e-204
Identity = 353/354 (99.72%), Postives = 353/354 (99.72%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL
Sbjct: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240
           DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240

Query: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300
           GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN
Sbjct: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300

Query: 301 YCSRGCQAQDWKVRHKEECTTVHRWRDEDANNAGEMFGIVEEEVEDANNIVGIV 355
           YCSRGCQAQDWKVRHKEECTTV RWRDEDANNAGEMFGIVEEEVEDANNIVGIV
Sbjct: 301 YCSRGCQAQDWKVRHKEECTTVQRWRDEDANNAGEMFGIVEEEVEDANNIVGIV 354

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BLAST of CSPI01G00540 vs. TrEMBL
Match: A0A0D2RJ28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G206200 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.0e-132
Identity = 242/353 (68.56%), Postives = 277/353 (78.47%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ R  R FT  SDLFD LP+DL+I +LS+LA+SASSPSD +N+L+TCKRLNRL L
Sbjct: 1   MLQRKKQRISRKFTDKSDLFDGLPEDLVISILSKLASSASSPSDFINILVTCKRLNRLAL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+ RNW DSAH FLK C++AGN EA YTLGMI+FYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKARNWCDSAHHFLKHCINAGNVEACYTLGMIQFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           +AKAAIKSHAPALYSL VIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 LAKAAIKSHAPALYSLGVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLT---ATRCSLL 240
           DGYGVRQ+  EGRRLL++ANARELA+ L +      QQ+H +  N    +    + C LL
Sbjct: 181 DGYGVRQHIAEGRRLLIRANARELASSLNALVKRKPQQQHQRRLNYQHYSFKAGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCG 300
           SDFGCNVPAPE HPVN+F +EWFES G  A   GLRLCSH GCGR ETR HEFRRCSVCG
Sbjct: 241 SDFGCNVPAPEVHPVNVFSKEWFES-GRGALGQGLRLCSHKGCGRPETRAHEFRRCSVCG 300

Query: 301 TVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-------NAGEMFGIVEEE 344
           TVNYCSRGCQA DWK+RHK EC  + RW +E  N         GEM  +VE E
Sbjct: 301 TVNYCSRGCQALDWKLRHKAECGPIERWLEEGGNGDDGGHGGVGEMEEVVEAE 352

[Close]

BLAST of CSPI01G00540 vs. TrEMBL
Match: A0A0B0PKV7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02830 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.0e-132
Identity = 243/353 (68.84%), Postives = 276/353 (78.19%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ R  R FT  SDLFD LP+DL+I +LS+LA SASSPSD +N+L+TCKRLNRL L
Sbjct: 1   MLQRKKQRISRKFTDKSDLFDGLPEDLVISILSKLAYSASSPSDFINILVTCKRLNRLAL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+  NW DSAH FLK C++AGN EA YTLGMI+FYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKAGNWCDSAHHFLKHCINAGNVEACYTLGMIQFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           +AKAAIKSHAPALYSL VIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 LAKAAIKSHAPALYSLGVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLT---ATRCSLL 240
           DGYGVRQ+  EGRRLL+QANARELA+ L +      QQ+H +  N    +    + C LL
Sbjct: 181 DGYGVRQHIAEGRRLLIQANARELASSLNALVKRKAQQQHQRRLNYQHYSFKAGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCG 300
           SDFGCNVPAPE HPVN+FL+EWFES G  A   GLRLCSH GCGR ETR HEFRRCSVCG
Sbjct: 241 SDFGCNVPAPEVHPVNVFLKEWFES-GRGALGQGLRLCSHKGCGRPETRAHEFRRCSVCG 300

Query: 301 TVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-------NAGEMFGIVEEE 344
           TVNYCSRGCQA DWK+RHK EC  + RW +E  N         GEM  +VE E
Sbjct: 301 TVNYCSRGCQALDWKLRHKAECGPIERWLEEGGNGNDGGHGGVGEMEEVVEAE 352

[Close]

BLAST of CSPI01G00540 vs. TrEMBL
Match: A0A061FZI2_THECC (HCP-like superfamily protein with MYND-type zinc finger OS=Theobroma cacao GN=TCM_014641 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.7e-131
Identity = 241/355 (67.89%), Postives = 282/355 (79.44%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ RT R  T  SDLFD +PDDL++ +L +L++S S P+D +N+LLTCKRLNRL L
Sbjct: 1   MLQKKKQRTTRKITDKSDLFDGVPDDLVVSILCKLSSSVSCPTDFVNILLTCKRLNRLGL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+ +NWSDSAHRFLK CV AGN EA YTLGMIRFYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKAKNWSDSAHRFLKHCVSAGNIEACYTLGMIRFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAA+KSHAPALYSLAVIQFNGSGGSK++KDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAMKSHAPALYSLAVIQFNGSGGSKNNKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPD---LTATRCSLL 240
           DGYGVRQN  EGRRLL+QANARELA+ L +      +Q+H +  N      +T + C LL
Sbjct: 181 DGYGVRQNITEGRRLLIQANARELASSLNTVVKRQLKQQHQRRLNYQHYAYMTGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESE-GEVAARVGLRLCSHSGCGRGETRPHEFRRCSVC 300
           SDFGCNVP PE HPV++FL+EWFES  GE+    GLRLCSH GCGR ETR HEFRRCSVC
Sbjct: 241 SDFGCNVPVPEGHPVHVFLKEWFESGLGELGQ--GLRLCSHKGCGRPETRAHEFRRCSVC 300

Query: 301 GTVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-NAGEMFGIVEEEVEDANNI 351
           GTVNYCSRGCQA DWK+RHK EC  + RW++E  N N G+      EEV +A ++
Sbjct: 301 GTVNYCSRGCQALDWKLRHKVECGPMERWQEEGGNGNGGDGGAGGMEEVGEAEDL 353

[Close]

BLAST of CSPI01G00540 vs. TrEMBL
Match: B9RAG1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506210 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 6.4e-131
Identity = 241/350 (68.86%), Postives = 271/350 (77.43%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M   KR +T R     SDLFD LPDD+++ +LS+L++SAS PSD +N+L TCKRLNRL L
Sbjct: 1   MYQRKRQKTSRRTPEKSDLFDELPDDIVVCILSKLSSSASCPSDFINILFTCKRLNRLAL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
            P+VL KAGP+ FAV+ +NWSDSAHRFLK C++AGN+EASYTLGMIRFYCL+NRG GASL
Sbjct: 61  QPVVLSKAGPQTFAVKAKNWSDSAHRFLKLCINAGNTEASYTLGMIRFYCLQNRGVGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAV+QFNGSGGSK DKDL+AGV+LCARAA LGH+DALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVMQFNGSGGSKIDKDLRAGVSLCARAAVLGHIDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQ--QQRHNQSGNLPDLTATRCSLLS 240
           DGYGV QN  EGRRLLVQANARELA+  L S  TWQ   Q H Q  +   + +  C LLS
Sbjct: 181 DGYGVAQNIAEGRRLLVQANARELAS-SLRSMLTWQPHNQHHRQYASCEVMESAGCPLLS 240

Query: 241 DFGCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGT 300
           DFGCNVPA E HP N FL EWFES G      GLRLCSHSGCGR ETRPHEFRRCSVCGT
Sbjct: 241 DFGCNVPAREVHPANRFLSEWFES-GRGLLGPGLRLCSHSGCGRPETRPHEFRRCSVCGT 300

Query: 301 VNYCSRGCQAQDWKVRHKEECTTVHRW----RDEDANNAGEMFGIVEEEV 345
           VNYCSRGCQA DWK+RHK EC  + +W     D   N  G M  I E E+
Sbjct: 301 VNYCSRGCQALDWKLRHKMECVPLEQWLVVEDDGHDNEIGAMVEIEEREI 348

[Close]

BLAST of CSPI01G00540 vs. TAIR10
Match: AT1G67340.1 (AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 442.2 bits (1136), Expect = 3.0e-124
Identity = 216/326 (66.26%), Postives = 248/326 (76.07%), Query Frame = 1


Query: 14  TVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVLNPMVLCKAGPKAF 73
           T  +DL D +PDDL+I +L +L +++  P+D +N+LLTCKRL  L +NP+VL +  PKA 
Sbjct: 38  TTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAI 97

Query: 74  AVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPAL 133
           AV+  NWS+ +HRFLKRCVDAG+ EA YTLGMIRFYCL+NRG+GASLMAKAAI SHAPAL
Sbjct: 98  AVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPAL 157

Query: 134 YSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNSDEGR 193
           YSLAVIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQDGYGV QN  EGR
Sbjct: 158 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGR 217

Query: 194 RLLVQANARELATVL---LSSSSTWQQQRHNQSGNLPDLTATRCSLLSDFGCNVPAPEPH 253
           R LVQANARELA VL   + + STW          +P+     C LLSDFGCNVPAPE H
Sbjct: 218 RFLVQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETH 277

Query: 254 PVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVNYCSRGCQAQD 313
           P N FL +WF   G      GLRLCSH+GCGR ETR HEFRRCSVCG VNYCSR CQA D
Sbjct: 278 PANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALD 337

Query: 314 WKVRHKEECTTVHRWRDEDANNAGEM 337
           WK+RHK +C  V RW +E     G +
Sbjct: 338 WKLRHKMDCAPVQRWLEEGDGGEGNV 363

[Close]

BLAST of CSPI01G00540 vs. TAIR10
Match: AT5G50450.1 (AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 391.7 bits (1005), Expect = 4.7e-109
Identity = 204/314 (64.97%), Postives = 239/314 (76.11%), Query Frame = 1


Query: 12  NFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVLNPMVLCKAGPK 71
           N TV++  F+ L DDL+I +L +LA SASSPSD L +L TCKRLNRL L+P+VL KAG +
Sbjct: 15  NNTVNNH-FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQ 74

Query: 72  AFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAP 131
             AV    WSDS+H+FLK CV+AGN +ASY+LGMIRFYCL+N  SGASLMAKAAIKSHAP
Sbjct: 75  TLAVTAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAP 134

Query: 132 ALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNSDE 191
           ALYSL+VIQFNGSGGSK+DK+L+AGVALCAR+A+LGHVDALRELGHCLQDGYGV ++  E
Sbjct: 135 ALYSLSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSE 194

Query: 192 GRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDFGCNVPAPEPHP 251
           GRRLL+QANARELA  L S  S    +  +++  L DL+             VP  E HP
Sbjct: 195 GRRLLIQANARELACSLRSYLSL---KSGDENETLTDLSV------------VPVQEIHP 254

Query: 252 VNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVNYCSRGCQAQDW 311
           VN FL+EWF S G V    GLR+CSH GCGR ETR HEFRRCSVCG VNYCSRGCQA DW
Sbjct: 255 VNRFLKEWF-SSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDW 311

Query: 312 KVRHKEECTTVHRW 326
           + +HK ECT +  W
Sbjct: 315 RAKHKVECTPLDLW 311

[Close]

BLAST of CSPI01G00540 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-06
Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 1


Query: 21  DVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVLNPMVLCKAGPKAFAVRMRNW 80
           D LP+DLL+ + S     ASS S + NL L  K   R+     V  +   K   +    W
Sbjct: 25  DSLPEDLLVEISS--CTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKE--IEFLPW 84

Query: 81  SDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSLAVIQ 140
            +++ +F++RC ++ N EA +  G I ++  + +  G   +A+AA K    A Y   VI 
Sbjct: 85  HENSAKFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 144

Query: 141 FNGSGGSK 149
               G +K
Sbjct: 145 ICLGGKTK 148

[Close]

BLAST of CSPI01G00540 vs. NCBI nr
Match: gi|449440552|ref|XP_004138048.1| (PREDICTED: F-box protein At1g67340-like [Cucumis sativus])

HSP 1 Score: 719.5 bits (1856), Expect = 2.8e-204
Identity = 353/354 (99.72%), Postives = 353/354 (99.72%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL
Sbjct: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240
           DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240

Query: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300
           GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN
Sbjct: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300

Query: 301 YCSRGCQAQDWKVRHKEECTTVHRWRDEDANNAGEMFGIVEEEVEDANNIVGIV 355
           YCSRGCQAQDWKVRHKEECTTV RWRDEDANNAGEMFGIVEEEVEDANNIVGIV
Sbjct: 301 YCSRGCQAQDWKVRHKEECTTVQRWRDEDANNAGEMFGIVEEEVEDANNIVGIV 354

[Close]

BLAST of CSPI01G00540 vs. NCBI nr
Match: gi|659128906|ref|XP_008464430.1| (PREDICTED: F-box protein At1g67340-like [Cucumis melo])

HSP 1 Score: 679.1 bits (1751), Expect = 4.2e-192
Identity = 337/354 (95.20%), Postives = 341/354 (96.33%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           MIS KRPRT RNFT DSDLFDVLPDDLLIHLL  LAASASSPSDLLNLLLTCKRLNRLVL
Sbjct: 1   MISVKRPRTRRNFTADSDLFDVLPDDLLIHLLCHLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAGPKAFAVRM+NW DS+HRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMQNWCDSSHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240
           DGYGVRQNSDEGRRLLVQANARELATVLLSSSS WQQQRHNQSGNLPDLTATRCSLLSDF
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSIWQQQRHNQSGNLPDLTATRCSLLSDF 240

Query: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300
           GCNVPAPEPHPVNLFLREWFESEGEVAAR GLRLCSHSGCGR ETRPHEFRRCSVCGTVN
Sbjct: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARGGLRLCSHSGCGRAETRPHEFRRCSVCGTVN 300

Query: 301 YCSRGCQAQDWKVRHKEECTTVHRWRDEDANNAGEMFGIVEEEVEDANNIVGIV 355
           YCSRGCQAQDWKVRHKEECTTV RWRDEDANNAGEMF IV EEVEDANNIVGIV
Sbjct: 301 YCSRGCQAQDWKVRHKEECTTVQRWRDEDANNAGEMFDIV-EEVEDANNIVGIV 353

[Close]

BLAST of CSPI01G00540 vs. NCBI nr
Match: gi|823212501|ref|XP_012439000.1| (PREDICTED: F-box protein At5g50450-like [Gossypium raimondii])

HSP 1 Score: 480.3 bits (1235), Expect = 2.8e-132
Identity = 242/353 (68.56%), Postives = 277/353 (78.47%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ R  R FT  SDLFD LP+DL+I +LS+LA+SASSPSD +N+L+TCKRLNRL L
Sbjct: 1   MLQRKKQRISRKFTDKSDLFDGLPEDLVISILSKLASSASSPSDFINILVTCKRLNRLAL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+ RNW DSAH FLK C++AGN EA YTLGMI+FYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKARNWCDSAHHFLKHCINAGNVEACYTLGMIQFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           +AKAAIKSHAPALYSL VIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 LAKAAIKSHAPALYSLGVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLT---ATRCSLL 240
           DGYGVRQ+  EGRRLL++ANARELA+ L +      QQ+H +  N    +    + C LL
Sbjct: 181 DGYGVRQHIAEGRRLLIRANARELASSLNALVKRKPQQQHQRRLNYQHYSFKAGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCG 300
           SDFGCNVPAPE HPVN+F +EWFES G  A   GLRLCSH GCGR ETR HEFRRCSVCG
Sbjct: 241 SDFGCNVPAPEVHPVNVFSKEWFES-GRGALGQGLRLCSHKGCGRPETRAHEFRRCSVCG 300

Query: 301 TVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-------NAGEMFGIVEEE 344
           TVNYCSRGCQA DWK+RHK EC  + RW +E  N         GEM  +VE E
Sbjct: 301 TVNYCSRGCQALDWKLRHKAECGPIERWLEEGGNGDDGGHGGVGEMEEVVEAE 352

[Close]

BLAST of CSPI01G00540 vs. NCBI nr
Match: gi|728846084|gb|KHG25527.1| (hypothetical protein F383_02830 [Gossypium arboreum])

HSP 1 Score: 480.3 bits (1235), Expect = 2.8e-132
Identity = 243/353 (68.84%), Postives = 276/353 (78.19%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ R  R FT  SDLFD LP+DL+I +LS+LA SASSPSD +N+L+TCKRLNRL L
Sbjct: 1   MLQRKKQRISRKFTDKSDLFDGLPEDLVISILSKLAYSASSPSDFINILVTCKRLNRLAL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+  NW DSAH FLK C++AGN EA YTLGMI+FYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKAGNWCDSAHHFLKHCINAGNVEACYTLGMIQFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           +AKAAIKSHAPALYSL VIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 LAKAAIKSHAPALYSLGVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLT---ATRCSLL 240
           DGYGVRQ+  EGRRLL+QANARELA+ L +      QQ+H +  N    +    + C LL
Sbjct: 181 DGYGVRQHIAEGRRLLIQANARELASSLNALVKRKAQQQHQRRLNYQHYSFKAGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCG 300
           SDFGCNVPAPE HPVN+FL+EWFES G  A   GLRLCSH GCGR ETR HEFRRCSVCG
Sbjct: 241 SDFGCNVPAPEVHPVNVFLKEWFES-GRGALGQGLRLCSHKGCGRPETRAHEFRRCSVCG 300

Query: 301 TVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-------NAGEMFGIVEEE 344
           TVNYCSRGCQA DWK+RHK EC  + RW +E  N         GEM  +VE E
Sbjct: 301 TVNYCSRGCQALDWKLRHKAECGPIERWLEEGGNGNDGGHGGVGEMEEVVEAE 352

[Close]

BLAST of CSPI01G00540 vs. NCBI nr
Match: gi|590670176|ref|XP_007037982.1| (HCP-like superfamily protein with MYND-type zinc finger [Theobroma cacao])

HSP 1 Score: 477.2 bits (1227), Expect = 2.4e-131
Identity = 241/355 (67.89%), Postives = 282/355 (79.44%), Query Frame = 1


Query: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60
           M+  K+ RT R  T  SDLFD +PDDL++ +L +L++S S P+D +N+LLTCKRLNRL L
Sbjct: 1   MLQKKKQRTTRKITDKSDLFDGVPDDLVVSILCKLSSSVSCPTDFVNILLTCKRLNRLGL 60

Query: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120
           +P+VL KAG KA AV+ +NWSDSAHRFLK CV AGN EA YTLGMIRFYCL+NRGSGASL
Sbjct: 61  HPLVLSKAGSKALAVKAKNWSDSAHRFLKHCVSAGNIEACYTLGMIRFYCLQNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAA+KSHAPALYSLAVIQFNGSGGSK++KDL+AGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAMKSHAPALYSLAVIQFNGSGGSKNNKDLRAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPD---LTATRCSLL 240
           DGYGVRQN  EGRRLL+QANARELA+ L +      +Q+H +  N      +T + C LL
Sbjct: 181 DGYGVRQNITEGRRLLIQANARELASSLNTVVKRQLKQQHQRRLNYQHYAYMTGSGCPLL 240

Query: 241 SDFGCNVPAPEPHPVNLFLREWFESE-GEVAARVGLRLCSHSGCGRGETRPHEFRRCSVC 300
           SDFGCNVP PE HPV++FL+EWFES  GE+    GLRLCSH GCGR ETR HEFRRCSVC
Sbjct: 241 SDFGCNVPVPEGHPVHVFLKEWFESGLGELGQ--GLRLCSHKGCGRPETRAHEFRRCSVC 300

Query: 301 GTVNYCSRGCQAQDWKVRHKEECTTVHRWRDEDAN-NAGEMFGIVEEEVEDANNI 351
           GTVNYCSRGCQA DWK+RHK EC  + RW++E  N N G+      EEV +A ++
Sbjct: 301 GTVNYCSRGCQALDWKLRHKVECGPMERWQEEGGNGNGGDGGAGGMEEVGEAEDL 353

The following BLAST results are available for this feature:

BLAST of CSPI01G00540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB76_ARATH	5.4e-123	66.26	F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1	[more]
FB342_ARATH	8.3e-108	64.97	F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1	[more]

BLAST of CSPI01G00540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNX1_CUCSA	1.9e-204	99.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002030 PE=4 SV=1	[more]
A0A0D2RJ28_GOSRA	2.0e-132	68.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G206200 PE=4 SV=1	[more]
A0A0B0PKV7_GOSAR	2.0e-132	68.84	Uncharacterized protein OS=Gossypium arboreum GN=F383_02830 PE=4 SV=1	[more]
A0A061FZI2_THECC	1.7e-131	67.89	HCP-like superfamily protein with MYND-type zinc finger OS=Theobroma cacao GN=TC...	[more]
B9RAG1_RICCO	6.4e-131	68.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506210 PE=4 SV=1	[more]

BLAST of CSPI01G00540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67340.1	3.0e-124	66.26	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	4.7e-109	64.97	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT1G67623.1	2.6e-06	29.69	F-box family protein	[more]

BLAST of CSPI01G00540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440552\|ref\|XP_004138048.1\|	2.8e-204	99.72	PREDICTED: F-box protein At1g67340-like [Cucumis sativus]	[more]
gi\|659128906\|ref\|XP_008464430.1\|	4.2e-192	95.20	PREDICTED: F-box protein At1g67340-like [Cucumis melo]	[more]
gi\|823212501\|ref\|XP_012439000.1\|	2.8e-132	68.56	PREDICTED: F-box protein At5g50450-like [Gossypium raimondii]	[more]
gi\|728846084\|gb\|KHG25527.1\|	2.8e-132	68.84	hypothetical protein F383_02830 [Gossypium arboreum]	[more]
gi\|590670176\|ref\|XP_007037982.1\|	2.4e-131	67.89	HCP-like superfamily protein with MYND-type zinc finger [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR002893	Znf_MYND
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G00540.1	CSPI01G00540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 22..62 score: 1.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 14..74 score: 1.3
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 280..319 score: 1.
IPR002893	Zinc finger, MYND-type	PROFILE	PS50865	ZF_MYND_2	coord: 277..319 score: 11
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 82..207 score: 1.3
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 16..63 score: 4.
None	No IPR available	PANTHER	PTHR12298	PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED	coord: 11..337 score: 8.8E
None	No IPR available	PANTHER	PTHR12298:SF7	SUBFAMILY NOT NAMED	coord: 11..337 score: 8.8E
None	No IPR available	unknown	SSF144232	HIT/MYND zinc finger-like	coord: 273..324 score: 1.0
None	No IPR available	unknown	SSF81901	HCP-like	coord: 74..199 score: 3.66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G00540	Cla019275	Watermelon (97103) v1	cpiwmB099
CSPI01G00540	Cla002619	Watermelon (97103) v1	cpiwmB029
CSPI01G00540	Csa1G002030	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G00540	Csa1G050480	Cucumber (Chinese Long) v2	cpicuB009
CSPI01G00540	MELO3C002360	Melon (DHL92) v3.5.1	cpimeB015
CSPI01G00540	MELO3C026207	Melon (DHL92) v3.5.1	cpimeB055
CSPI01G00540	ClCG03G003750	Watermelon (Charleston Gray)	cpiwcgB053
CSPI01G00540	ClCG06G017880	Watermelon (Charleston Gray)	cpiwcgB083
CSPI01G00540	Lsi02G005030	Bottle gourd (USVL1VR-Ls)	cpilsiB041
CSPI01G00540	Lsi06G016410	Bottle gourd (USVL1VR-Ls)	cpilsiB070
CSPI01G00540	MELO3C026207.2	Melon (DHL92) v3.6.1	cpimedB049
CSPI01G00540	MELO3C002360.2	Melon (DHL92) v3.6.1	cpimedB014
CSPI01G00540	CsaV3_1G000570	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G00540	CsaV3_1G009640	Cucumber (Chinese Long) v3	cpicucB015
CSPI01G00540	Cla97C03G054890	Watermelon (97103) v2	cpiwmbB051
CSPI01G00540	Cla97C06G127620	Watermelon (97103) v2	cpiwmbB079
CSPI01G00540	Bhi08G001227	Wax gourd	cpiwgoB061
CSPI01G00540	Cucsa.157340	Cucumber (Gy14) v1	cgycpiB229
CSPI01G00540	CmaCh13G008040	Cucurbita maxima (Rimu)	cmacpiB227
CSPI01G00540	CmaCh10G000620	Cucurbita maxima (Rimu)	cmacpiB049
CSPI01G00540	CmoCh18G002180	Cucurbita moschata (Rifu)	cmocpiB396
CSPI01G00540	CmoCh13G008360	Cucurbita moschata (Rifu)	cmocpiB213
CSPI01G00540	CmoCh10G000560	Cucurbita moschata (Rifu)	cmocpiB040
CSPI01G00540	Cp4.1LG20g03040	Cucurbita pepo (Zucchini)	cpecpiB515
CSPI01G00540	Cp4.1LG18g09180	Cucurbita pepo (Zucchini)	cpecpiB361
CSPI01G00540	CsGy1G000550	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G00540	CsGy1G009560	Cucumber (Gy14) v2	cgybcpiB013
CSPI01G00540	Carg10281	Silver-seed gourd	carcpiB0396

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CSPI01G00540	CSPI01G09530	Wild cucumber (PI 183967)	cpicpiB003

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G00540	Cucumber (Gy14) v2	cgybcpiB095
CSPI01G00540	Silver-seed gourd	carcpiB1083
CSPI01G00540	Cucumber (Chinese Long) v3	cpicucB028
CSPI01G00540	Watermelon (97103) v2	cpiwmbB065
CSPI01G00540	Wax gourd	cpiwgoB081
CSPI01G00540	Wild cucumber (PI 183967)	cpicpiB014
CSPI01G00540	Cucurbita maxima (Rimu)	cmacpiB085
CSPI01G00540	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G00540	Cucumber (Chinese Long) v2	cpicuB024
CSPI01G00540	Melon (DHL92) v3.5.1	cpimeB079
CSPI01G00540	Watermelon (Charleston Gray)	cpiwcgB068
CSPI01G00540	Cucurbita pepo (Zucchini)	cpecpiB656