Bhi11G001595 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G001595
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Immediate early response 3-interacting protein 1
Location	chr11 : 53855789 .. 53856022 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

mRNA sequence

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

Coding sequence (CDS)

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

Protein sequence

MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRLPLILFNIIIIIIKLFSG

Homology

[Close]

BLAST of Bhi11G001595 vs. Swiss-Prot
Match: sp|O13825|YOS1_SCHPO (Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=yos1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.5e-05
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 2  GFWTFLEGLLLFANAFAILNEDRFLARRGW--TLAEMSRERRNTLKGQVIGLIHACQ-FL 61
          GF   L   LL  NA AIL+EDRFL R GW  + A    +R++T+K +++ LI A +  +
Sbjct: 3  GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query: 62 RLPLILFNIIIIIIKLFSG 78
            PLI  N I+I+  L  G
Sbjct: 63 TFPLIAINTIVIVYNLVLG 81

[Close]

BLAST of Bhi11G001595 vs. TAIR10
Match: AT2G37975.1 (Yos1-like protein)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-27
Identity = 57/78 (73.08%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRE-RRNTLKGQVIGLIHACQFLR 60
          MGFWT +EGLLLFANA AILNEDRFLA +GWTLAE+ +  +RN+LKGQ+IGLIHAC ++R
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 61 LPLILFNIIIIIIKLFSG 78
          LPL+LFN+I+I+ KLFSG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

[Close]

BLAST of Bhi11G001595 vs. TAIR10
Match: AT3G54085.1 (Yos1-like protein)

HSP 1 Score: 109.8 bits (273), Expect = 7.7e-25
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSR-ERRNTLKGQVIGLIHACQFLR 60
          MGFWT L+GLLLFANA AILNEDRFL  RGWTL E+ + +RRN+ KGQ+IGLIHACQ++R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 LPLILFNIIIIIIKLFSG 78
          LPL+L N  +I++KL SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

[Close]

BLAST of Bhi11G001595 vs. TrEMBL
Match: tr|A0A1S3B5S0|A0A1S3B5S0_CUCME (protein transport protein yos1-like OS=Cucumis melo OX=3656 GN=LOC103486333 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLF NAFAILNEDRFLARRGWTLAEMSRERR+TLKGQV+GLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFTNAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVVGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII II+KLFSG
Sbjct: 61 PLILFNIITIIVKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. TrEMBL
Match: tr|G7JRA6|G7JRA6_MEDTR (Yos1-like protein OS=Medicago truncatula OX=3880 GN=11414286 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.2e-29
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1   MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
           MGFWT LEGLLLFANA AILNEDRFLARRGWTLAEM+  RRN+LKGQVIGLI+ACQFLRL
Sbjct: 116 MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 175

Query: 61  PLILFNIIIIIIKLFSG 78
           PLILFNIIIII+KLFSG
Sbjct: 176 PLILFNIIIIIVKLFSG 192

[Close]

BLAST of Bhi11G001595 vs. TrEMBL
Match: tr|I3S6H8|I3S6H8_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEGLLLFANA AILNEDRFLARRGWTLAEM+  R N+LKGQVIGLI+ACQFLRL
Sbjct: 1  MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGLRGNSLKGQVIGLIYACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIIII+KLFSG
Sbjct: 61 PLILFNIIIIIVKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. TrEMBL
Match: tr|A0A061EYI1|A0A061EYI1_THECC (Yos1-like protein OS=Theobroma cacao OX=3641 GN=TCM_021785 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEGLLLFANA AILNEDRFLA RGWTLAE+   RRNTLKGQ+IGLIHACQFLRL
Sbjct: 1  MGFWTLLEGLLLFANALAILNEDRFLALRGWTLAEIQGGRRNTLKGQIIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII I++KLF+G
Sbjct: 61 PLILFNIITIVVKLFTG 77

[Close]

BLAST of Bhi11G001595 vs. TrEMBL
Match: tr|I1JLU3|I1JLU3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100818505 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-27
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEG LLFANA AILNEDRFLARRGWTLAEM+  +RN+LKGQVIGLI+ACQFLRL
Sbjct: 18 MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRL 77

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFN+I II+KLFSG
Sbjct: 78 PLILFNVITIIVKLFSG 94

[Close]

BLAST of Bhi11G001595 vs. NCBI nr
Match: XP_022983483.1 (protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein transport protein yos1-like [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 7.0e-32
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTLAEMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLAEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. NCBI nr
Match: XP_022934956.1 (protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo] >XP_023527549.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTL EMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLGEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. NCBI nr
Match: XP_022145757.1 (protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protein transport protein yos1-like [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTLAEMSR+RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. NCBI nr
Match: XP_008442479.1 (PREDICTED: protein transport protein yos1-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLF NAFAILNEDRFLARRGWTLAEMSRERR+TLKGQV+GLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFTNAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVVGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII II+KLFSG
Sbjct: 61 PLILFNIITIIVKLFSG 77

[Close]

BLAST of Bhi11G001595 vs. NCBI nr
Match: XP_004137742.1 (PREDICTED: protein transport protein yos1-like [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLFANAFAILNEDRFLARRGWTLAEMSRERR+TLKGQVIGLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLIL NII II+KLFSG
Sbjct: 61 PLILLNIITIIVKLFSG 77

The following BLAST results are available for this feature:

BLAST of Bhi11G001595 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13825\|YOS1_SCHPO	6.5e-05	41.77	Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Bhi11G001595 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37975.1	2.8e-27	73.08	Yos1-like protein	[more]
AT3G54085.1	7.7e-25	69.23	Yos1-like protein	[more]

BLAST of Bhi11G001595 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5S0\|A0A1S3B5S0_CUCME	1.7e-29	88.31	protein transport protein yos1-like OS=Cucumis melo OX=3656 GN=LOC103486333 PE=4...	[more]
tr\|G7JRA6\|G7JRA6_MEDTR	8.2e-29	89.61	Yos1-like protein OS=Medicago truncatula OX=3880 GN=11414286 PE=4 SV=1	[more]
tr\|I3S6H8\|I3S6H8_MEDTR	9.1e-28	88.31	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
tr\|A0A061EYI1\|A0A061EYI1_THECC	2.6e-27	84.42	Yos1-like protein OS=Theobroma cacao OX=3641 GN=TCM_021785 PE=4 SV=1	[more]
tr\|I1JLU3\|I1JLU3_SOYBN	3.4e-27	84.42	Uncharacterized protein OS=Glycine max OX=3847 GN=100818505 PE=4 SV=1	[more]

BLAST of Bhi11G001595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983483.1	7.0e-32	96.10	protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein t...	[more]
XP_022934956.1	2.0e-31	94.81	protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein...	[more]
XP_022145757.1	2.3e-30	92.21	protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protei...	[more]
XP_008442479.1	2.5e-29	88.31	PREDICTED: protein transport protein yos1-like [Cucumis melo]	[more]
XP_004137742.1	3.3e-29	89.61	PREDICTED: protein transport protein yos1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013880	Yos1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0030134	ER to Golgi transport vesicle
cellular_component	GO:0030173	integral component of Golgi membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001595	Bhi11M001595	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 3..77 e-value: 4.1E-23 score: 81.4
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 1..77
None	No IPR available	PANTHER	PTHR15858:SF2	SUBFAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G001595	ClCG10G021700	Watermelon (Charleston Gray)	wcgwgoB093
Bhi11G001595	Cucsa.176020	Cucumber (Gy14) v1	cgywgoB359
Bhi11G001595	CmaCh14G000940	Cucurbita maxima (Rimu)	cmawgoB0290
Bhi11G001595	CmoCh14G000890	Cucurbita moschata (Rifu)	cmowgoB0280
Bhi11G001595	CmoCh06G002540	Cucurbita moschata (Rifu)	cmowgoB0972
Bhi11G001595	Lsi03G021690	Bottle gourd (USVL1VR-Ls)	lsiwgoB299
Bhi11G001595	Carg05997	Silver-seed gourd	carwgoB0017
Bhi11G001595	Cla97C10G204970	Watermelon (97103) v2	wgowmbB014

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G001595	Wax gourd	wgowgoB004
Bhi11G001595	Wax gourd	wgowgoB013
Bhi11G001595	Cucumber (Gy14) v1	cgywgoB063
Bhi11G001595	Cucumber (Gy14) v1	cgywgoB260
Bhi11G001595	Cucumber (Gy14) v2	cgybwgoB210
Bhi11G001595	Cucumber (Gy14) v2	cgybwgoB347
Bhi11G001595	Cucumber (Gy14) v2	cgybwgoB505
Bhi11G001595	Cucurbita maxima (Rimu)	cmawgoB0554
Bhi11G001595	Cucurbita maxima (Rimu)	cmawgoB0772
Bhi11G001595	Cucurbita maxima (Rimu)	cmawgoB0820
Bhi11G001595	Cucurbita maxima (Rimu)	cmawgoB0976
Bhi11G001595	Cucurbita maxima (Rimu)	cmawgoB1048
Bhi11G001595	Cucurbita moschata (Rifu)	cmowgoB0765
Bhi11G001595	Cucurbita moschata (Rifu)	cmowgoB0816
Bhi11G001595	Cucurbita moschata (Rifu)	cmowgoB1040
Bhi11G001595	Cucurbita pepo (Zucchini)	cpewgoB0068
Bhi11G001595	Cucurbita pepo (Zucchini)	cpewgoB0483
Bhi11G001595	Cucurbita pepo (Zucchini)	cpewgoB0582
Bhi11G001595	Cucurbita pepo (Zucchini)	cpewgoB0744
Bhi11G001595	Cucurbita pepo (Zucchini)	cpewgoB1086
Bhi11G001595	Wild cucumber (PI 183967)	cpiwgoB219
Bhi11G001595	Wild cucumber (PI 183967)	cpiwgoB363
Bhi11G001595	Wild cucumber (PI 183967)	cpiwgoB533
Bhi11G001595	Cucumber (Chinese Long) v3	cucwgoB224
Bhi11G001595	Cucumber (Chinese Long) v3	cucwgoB365
Bhi11G001595	Cucumber (Chinese Long) v3	cucwgoB544
Bhi11G001595	Cucumber (Chinese Long) v2	cuwgoB219
Bhi11G001595	Cucumber (Chinese Long) v2	cuwgoB360
Bhi11G001595	Cucumber (Chinese Long) v2	cuwgoB530
Bhi11G001595	Bottle gourd (USVL1VR-Ls)	lsiwgoB150
Bhi11G001595	Bottle gourd (USVL1VR-Ls)	lsiwgoB297
Bhi11G001595	Melon (DHL92) v3.6.1	medwgoB623
Bhi11G001595	Melon (DHL92) v3.6.1	medwgoB318
Bhi11G001595	Melon (DHL92) v3.6.1	medwgoB381
Bhi11G001595	Melon (DHL92) v3.5.1	mewgoB319
Bhi11G001595	Melon (DHL92) v3.5.1	mewgoB379
Bhi11G001595	Melon (DHL92) v3.5.1	mewgoB618
Bhi11G001595	Watermelon (Charleston Gray)	wcgwgoB137
Bhi11G001595	Watermelon (Charleston Gray)	wcgwgoB374
Bhi11G001595	Watermelon (97103) v2	wgowmbB029
Bhi11G001595	Watermelon (97103) v2	wgowmbB035
Bhi11G001595	Watermelon (97103) v1	wgowmB020
Bhi11G001595	Watermelon (97103) v1	wgowmB048
Bhi11G001595	Watermelon (97103) v1	wgowmB054
Bhi11G001595	Silver-seed gourd	carwgoB0691
Bhi11G001595	Silver-seed gourd	carwgoB0200
Bhi11G001595	Silver-seed gourd	carwgoB0664
Bhi11G001595	Silver-seed gourd	carwgoB1166