Bhi11M001595 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11M001595
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Immediate early response 3-interacting protein 1
Location	chr11 : 53855789 .. 53856022 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

mRNA sequence

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

Coding sequence (CDS)

ATGGGATTCTGGACCTTCTTAGAGGGGCTTCTGCTGTTTGCAAATGCCTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAATACACTCAAAGGCCAGGTAATAGGACTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCATCATCATCATCAAGCTCTTCTCTGGTTGA

Protein sequence

MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRLPLILFNIIIIIIKLFSG

Homology

[Close]

BLAST of Bhi11M001595 vs. Swiss-Prot
Match: sp|O13825|YOS1_SCHPO (Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=yos1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.5e-05
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 2  GFWTFLEGLLLFANAFAILNEDRFLARRGW--TLAEMSRERRNTLKGQVIGLIHACQ-FL 61
          GF   L   LL  NA AIL+EDRFL R GW  + A    +R++T+K +++ LI A +  +
Sbjct: 3  GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query: 62 RLPLILFNIIIIIIKLFSG 78
            PLI  N I+I+  L  G
Sbjct: 63 TFPLIAINTIVIVYNLVLG 81

[Close]

BLAST of Bhi11M001595 vs. TAIR10
Match: AT2G37975.1 (Yos1-like protein)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-27
Identity = 57/78 (73.08%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRE-RRNTLKGQVIGLIHACQFLR 60
          MGFWT +EGLLLFANA AILNEDRFLA +GWTLAE+ +  +RN+LKGQ+IGLIHAC ++R
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 61 LPLILFNIIIIIIKLFSG 78
          LPL+LFN+I+I+ KLFSG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

[Close]

BLAST of Bhi11M001595 vs. TAIR10
Match: AT3G54085.1 (Yos1-like protein)

HSP 1 Score: 109.8 bits (273), Expect = 7.7e-25
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSR-ERRNTLKGQVIGLIHACQFLR 60
          MGFWT L+GLLLFANA AILNEDRFL  RGWTL E+ + +RRN+ KGQ+IGLIHACQ++R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 LPLILFNIIIIIIKLFSG 78
          LPL+L N  +I++KL SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

[Close]

BLAST of Bhi11M001595 vs. TrEMBL
Match: tr|A0A1S3B5S0|A0A1S3B5S0_CUCME (protein transport protein yos1-like OS=Cucumis melo OX=3656 GN=LOC103486333 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLF NAFAILNEDRFLARRGWTLAEMSRERR+TLKGQV+GLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFTNAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVVGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII II+KLFSG
Sbjct: 61 PLILFNIITIIVKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. TrEMBL
Match: tr|G7JRA6|G7JRA6_MEDTR (Yos1-like protein OS=Medicago truncatula OX=3880 GN=11414286 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.2e-29
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1   MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
           MGFWT LEGLLLFANA AILNEDRFLARRGWTLAEM+  RRN+LKGQVIGLI+ACQFLRL
Sbjct: 116 MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 175

Query: 61  PLILFNIIIIIIKLFSG 78
           PLILFNIIIII+KLFSG
Sbjct: 176 PLILFNIIIIIVKLFSG 192

[Close]

BLAST of Bhi11M001595 vs. TrEMBL
Match: tr|I3S6H8|I3S6H8_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEGLLLFANA AILNEDRFLARRGWTLAEM+  R N+LKGQVIGLI+ACQFLRL
Sbjct: 1  MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGLRGNSLKGQVIGLIYACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIIII+KLFSG
Sbjct: 61 PLILFNIIIIIVKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. TrEMBL
Match: tr|A0A061EYI1|A0A061EYI1_THECC (Yos1-like protein OS=Theobroma cacao OX=3641 GN=TCM_021785 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEGLLLFANA AILNEDRFLA RGWTLAE+   RRNTLKGQ+IGLIHACQFLRL
Sbjct: 1  MGFWTLLEGLLLFANALAILNEDRFLALRGWTLAEIQGGRRNTLKGQIIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII I++KLF+G
Sbjct: 61 PLILFNIITIVVKLFTG 77

[Close]

BLAST of Bhi11M001595 vs. TrEMBL
Match: tr|I1JLU3|I1JLU3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100818505 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-27
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWT LEG LLFANA AILNEDRFLARRGWTLAEM+  +RN+LKGQVIGLI+ACQFLRL
Sbjct: 18 MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRL 77

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFN+I II+KLFSG
Sbjct: 78 PLILFNVITIIVKLFSG 94

[Close]

BLAST of Bhi11M001595 vs. NCBI nr
Match: XP_022983483.1 (protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein transport protein yos1-like [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 7.0e-32
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTLAEMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLAEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. NCBI nr
Match: XP_022934956.1 (protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo] >XP_023527549.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTL EMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLGEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. NCBI nr
Match: XP_022145757.1 (protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protein transport protein yos1-like [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTLAEMSR+RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. NCBI nr
Match: XP_008442479.1 (PREDICTED: protein transport protein yos1-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLF NAFAILNEDRFLARRGWTLAEMSRERR+TLKGQV+GLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFTNAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVVGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLILFNII II+KLFSG
Sbjct: 61 PLILFNIITIIVKLFSG 77

[Close]

BLAST of Bhi11M001595 vs. NCBI nr
Match: XP_004137742.1 (PREDICTED: protein transport protein yos1-like [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60
          M FWTF +G+LLFANAFAILNEDRFLARRGWTLAEMSRERR+TLKGQVIGLIHACQFLRL
Sbjct: 1  MWFWTFFQGILLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIIIKLFSG 78
          PLIL NII II+KLFSG
Sbjct: 61 PLILLNIITIIVKLFSG 77

The following BLAST results are available for this feature:

BLAST of Bhi11M001595 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13825\|YOS1_SCHPO	6.5e-05	41.77	Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Bhi11M001595 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37975.1	2.8e-27	73.08	Yos1-like protein	[more]
AT3G54085.1	7.7e-25	69.23	Yos1-like protein	[more]

BLAST of Bhi11M001595 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5S0\|A0A1S3B5S0_CUCME	1.7e-29	88.31	protein transport protein yos1-like OS=Cucumis melo OX=3656 GN=LOC103486333 PE=4...	[more]
tr\|G7JRA6\|G7JRA6_MEDTR	8.2e-29	89.61	Yos1-like protein OS=Medicago truncatula OX=3880 GN=11414286 PE=4 SV=1	[more]
tr\|I3S6H8\|I3S6H8_MEDTR	9.1e-28	88.31	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
tr\|A0A061EYI1\|A0A061EYI1_THECC	2.6e-27	84.42	Yos1-like protein OS=Theobroma cacao OX=3641 GN=TCM_021785 PE=4 SV=1	[more]
tr\|I1JLU3\|I1JLU3_SOYBN	3.4e-27	84.42	Uncharacterized protein OS=Glycine max OX=3847 GN=100818505 PE=4 SV=1	[more]

BLAST of Bhi11M001595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983483.1	7.0e-32	96.10	protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein t...	[more]
XP_022934956.1	2.0e-31	94.81	protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein...	[more]
XP_022145757.1	2.3e-30	92.21	protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protei...	[more]
XP_008442479.1	2.5e-29	88.31	PREDICTED: protein transport protein yos1-like [Cucumis melo]	[more]
XP_004137742.1	3.3e-29	89.61	PREDICTED: protein transport protein yos1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013880	Yos1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0030134	ER to Golgi transport vesicle
cellular_component	GO:0030173	integral component of Golgi membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi11G001595	Bhi11G001595	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi11M001595.exon1	Bhi11M001595.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi11M001595	cds.Bhi11M001595	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi11M001595	Bhi11M001595-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 3..77 e-value: 4.1E-23 score: 81.4
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 1..77
None	No IPR available	PANTHER	PTHR15858:SF2	SUBFAMILY NOT NAMED	coord: 1..77