Bhi08G001277 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G001277
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like
Location	chr8 : 44901130 .. 44901426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

mRNA sequence

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

Coding sequence (CDS)

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

Protein sequence

MEKAEDLINETVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVNLLRDKANSLSPHDVLIECDD

Homology

[Close]

BLAST of Bhi08G001277 vs. TrEMBL
Match: tr|A0A1S3B572|A0A1S3B572_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.7e-32
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MEKAEDLINETV-TRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           +EKAE+L+NE V  RGKFSVESWCYLASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEI
Sbjct: 357 IEKAEELVNEIVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSP---HDVLIE 96
           LA F  GKQDV+EAE+VVNLLR+K N L+P   HD+L+E
Sbjct: 417 LAAFSDGKQDVEEAEKVVNLLREKDN-LNPARAHDILVE 454

[Close]

BLAST of Bhi08G001277 vs. TrEMBL
Match: tr|A0A0A0LV44|A0A0A0LV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-28
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEKAEDLINE-TVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE L+NE  + R KFSVESWCYLASGYLQKDQLPQAV+TLK AAS+CPS LN+ KEI
Sbjct: 357 MEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS--LSPHDVLI 95
           LA FL GKQDV+E E+VVNLLR+K +S     HD ++
Sbjct: 417 LAAFLDGKQDVEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of Bhi08G001277 vs. TrEMBL
Match: tr|A0A1S3B6G4|A0A1S3B6G4_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486307 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           ME+AE L+ E +T R KFSV+SWCY+ASGYLQKDQLP+AV+TLK AASLCPS+L++ KEI
Sbjct: 363 MEEAEVLVYEMMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEI 422

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS 87
           LA FL GKQDV+E E+VVNLLR+K NS
Sbjct: 423 LAAFLDGKQDVEEVEKVVNLLREKDNS 449

[Close]

BLAST of Bhi08G001277 vs. TrEMBL
Match: tr|A0A0A0LSC2|A0A0A0LSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 19  VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVN 78
           V+++C  ASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEILA FL GKQD +E E+VVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 79  LLRDKANS--LSPHDVLIE 96
           LLR+K +S     HD+L+E
Sbjct: 292 LLREKDDSHPARAHDILVE 310

[Close]

BLAST of Bhi08G001277 vs. TrEMBL
Match: tr|A0A2R6QLF3|A0A2R6QLF3_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17334 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-12
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 3   KAEDLINETVTRGKFS-VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILA 62
           KAE L+N+ + +G    V +WCYLA GYL  DQ+P+AVD LK+A ++CP      K+ L 
Sbjct: 361 KAEALVNKGIAKGGDPLVNTWCYLAGGYLDFDQVPKAVDALKKAITVCPPNSKPNKDTLV 420

Query: 63  ---NFLGGKQDVKEAEEVVNLLRDK-ANSLSPHDVLI 95
               +L G+ DV+ AEE ++LLR++   S S HD L+
Sbjct: 421 TCLEYLEGQGDVERAEEFISLLRNEGVFSASVHDKLL 457

[Close]

BLAST of Bhi08G001277 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MEKAEDLINETV-TRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           +EKAE+L+NE V  RGKFSVESWCYLASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEI
Sbjct: 357 IEKAEELVNEIVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSP---HDVLIE 96
           LA F  GKQDV+EAE+VVNLLR+K N L+P   HD+L+E
Sbjct: 417 LAAFSDGKQDVEEAEKVVNLLREKDN-LNPARAHDILVE 454

[Close]

BLAST of Bhi08G001277 vs. NCBI nr
Match: XP_022140106.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE LIN+ VT + KFSV SWCYLA+ Y+QKDQL   V+ LK+AA+LCP ELNHFKEI
Sbjct: 357 MEKAEALINKAVTGKSKFSVHSWCYLANAYIQKDQLQHTVEALKKAATLCPPELNHFKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSPHDVLIECDD 99
           LA FL GKQDVKEAE+VV LLR +ANSL  HDVLI+C D
Sbjct: 417 LATFLEGKQDVKEAEKVVGLLRAEANSLFAHDVLIDCGD 455

[Close]

BLAST of Bhi08G001277 vs. NCBI nr
Match: XP_011653157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus] >KGN64672.1 hypothetical protein Csa_1G073790 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEKAEDLINE-TVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE L+NE  + R KFSVESWCYLASGYLQKDQLPQAV+TLK AAS+CPS LN+ KEI
Sbjct: 357 MEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS--LSPHDVLI 95
           LA FL GKQDV+E E+VVNLLR+K +S     HD ++
Sbjct: 417 LAAFLDGKQDVEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of Bhi08G001277 vs. NCBI nr
Match: XP_008442448.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           ME+AE L+ E +T R KFSV+SWCY+ASGYLQKDQLP+AV+TLK AASLCPS+L++ KEI
Sbjct: 363 MEEAEVLVYEMMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEI 422

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS 87
           LA FL GKQDV+E E+VVNLLR+K NS
Sbjct: 423 LAAFLDGKQDVEEVEKVVNLLREKDNS 449

[Close]

BLAST of Bhi08G001277 vs. NCBI nr
Match: KGN64673.1 (hypothetical protein Csa_1G073800 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 19  VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVN 78
           V+++C  ASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEILA FL GKQD +E E+VVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 79  LLRDKANS--LSPHDVLIE 96
           LLR+K +S     HD+L+E
Sbjct: 292 LLREKDDSHPARAHDILVE 310

The following BLAST results are available for this feature:

BLAST of Bhi08G001277 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G001277 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G001277 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B572\|A0A1S3B572_CUCME	7.7e-32	75.76	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LV44\|A0A0A0LV44_CUCSA	6.8e-28	70.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]
tr\|A0A1S3B6G4\|A0A1S3B6G4_CUCME	8.3e-26	72.41	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LSC2\|A0A0A0LSC2_CUCSA	1.0e-20	68.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1	[more]
tr\|A0A2R6QLF3\|A0A2R6QLF3_ACTCH	8.9e-12	44.33	Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi...	[more]

BLAST of Bhi08G001277 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442434.1	1.2e-31	75.76	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_022140106.1	4.4e-31	71.72	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momor...	[more]
XP_011653157.1	1.0e-27	70.10	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_008442448.1	1.2e-25	72.41	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
KGN64673.1	1.6e-20	68.35	hypothetical protein Csa_1G073800 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001277	Bhi08M001277	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..94 e-value: 4.2E-6 score: 28.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 2..83
None	No IPR available	PANTHER	PTHR24015:SF1625	SUBFAMILY NOT NAMED	coord: 1..85
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..85
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 1..52 score: 9.833
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 19..52 score: 9.086

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G001277	CsaV3_1G012260	Cucumber (Chinese Long) v3	cucwgoB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G001277	Wax gourd	wgowgoB075
Bhi08G001277	Cucumber (Gy14) v1	cgywgoB233
Bhi08G001277	Cucumber (Gy14) v1	cgywgoB578
Bhi08G001277	Cucumber (Gy14) v2	cgybwgoB035
Bhi08G001277	Cucurbita maxima (Rimu)	cmawgoB0273
Bhi08G001277	Cucurbita maxima (Rimu)	cmawgoB0523
Bhi08G001277	Cucurbita moschata (Rifu)	cmowgoB0265
Bhi08G001277	Cucurbita moschata (Rifu)	cmowgoB0522
Bhi08G001277	Cucurbita pepo (Zucchini)	cpewgoB0049
Bhi08G001277	Cucurbita pepo (Zucchini)	cpewgoB0640
Bhi08G001277	Wild cucumber (PI 183967)	cpiwgoB038
Bhi08G001277	Cucumber (Chinese Long) v2	cuwgoB038
Bhi08G001277	Bottle gourd (USVL1VR-Ls)	lsiwgoB247
Bhi08G001277	Melon (DHL92) v3.6.1	medwgoB183
Bhi08G001277	Melon (DHL92) v3.5.1	mewgoB181
Bhi08G001277	Watermelon (Charleston Gray)	wcgwgoB347
Bhi08G001277	Watermelon (97103) v2	wgowmbB477
Bhi08G001277	Watermelon (97103) v1	wgowmB478
Bhi08G001277	Silver-seed gourd	carwgoB0194
Bhi08G001277	Silver-seed gourd	carwgoB1100