CsaV3_1G012260 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012260
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like
Location	chr1 : 7598446 .. 7598715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACTGTAAGAGGCAAGTTTTCGGTCAAGTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAGGATCAACTACCTCAGGCAGTTGAGACACTGAAGAAAGCAGCCAGTTTGTGTCCATCAGAACTGAACTACGCCAAGGAAATTTTGGCAGCATTTTTGGATGGGAAGCAAGATGAGGAAGAAACTGAGAAAGTGGTTAATTTGTTGAGGGAAAAAGATGACTCTCATCCTGCTCGTGCTCATGATATATTGGTAGAGCGATGA

mRNA sequence

ATGGTGACTGTAAGAGGCAAGTTTTCGGTCAAGTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAGGATCAACTACCTCAGGCAGTTGAGACACTGAAGAAAGCAGCCAGTTTGTGTCCATCAGAACTGAACTACGCCAAGGAAATTTTGGCAGCATTTTTGGATGGGAAGCAAGATGAGGAAGAAACTGAGAAAGTGGTTAATTTGTTGAGGGAAAAAGATGACTCTCATCCTGCTCGTGCTCATGATATATTGGTAGAGCGATGA

Coding sequence (CDS)

ATGGTGACTGTAAGAGGCAAGTTTTCGGTCAAGTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAGGATCAACTACCTCAGGCAGTTGAGACACTGAAGAAAGCAGCCAGTTTGTGTCCATCAGAACTGAACTACGCCAAGGAAATTTTGGCAGCATTTTTGGATGGGAAGCAAGATGAGGAAGAAACTGAGAAAGTGGTTAATTTGTTGAGGGAAAAAGATGACTCTCATCCTGCTCGTGCTCATGATATATTGGTAGAGCGATGA

Protein sequence

MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVNLLREKDDSHPARAHDILVER

Homology

[Close]

BLAST of CsaV3_1G012260 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           +V VRGKFSV+SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNY KEILAAF DGKQD
Sbjct: 367 IVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQD 426

Query: 61  EEETEKVVNLLREKDDSHPARAHDILVER 90
            EE EKVVNLLREKD+ +PARAHDILVER
Sbjct: 427 VEEAEKVVNLLREKDNLNPARAHDILVER 455

[Close]

BLAST of CsaV3_1G012260 vs. NCBI nr
Match: XP_011653157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus] >KGN64672.1 hypothetical protein Csa_1G073790 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           MV VR KFSV+SWCYLASGYLQKDQLPQAVETLK AAS+CPS LNY KEILAAFLDGKQD
Sbjct: 367 MVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAFLDGKQD 426

Query: 61  EEETEKVVNLLREKDDSHPARAHDILV 88
            EETEKVVNLLREKDDSHPARAHD +V
Sbjct: 427 VEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of CsaV3_1G012260 vs. NCBI nr
Match: KGN64673.1 (hypothetical protein Csa_1G073800 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 9.7e-33
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 10  VKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 69
           V ++C  ASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 70  LLREKDDSHPARAHDILVER 90
           LLREKDDSHPARAHDILVER
Sbjct: 292 LLREKDDSHPARAHDILVER 311

[Close]

BLAST of CsaV3_1G012260 vs. NCBI nr
Match: XP_008442448.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           M+TVR KFSVKSWCY+ASGYLQKDQLP+AVETLK AASLCPS+L+Y KEILAAFLDGKQD
Sbjct: 373 MMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEILAAFLDGKQD 432

Query: 61  EEETEKVVNLLREKDDSHPARAHDILV 88
            EE EKVVNLLREKD+SHPAR HD  +
Sbjct: 433 VEEVEKVVNLLREKDNSHPARGHDYAI 459

[Close]

BLAST of CsaV3_1G012260 vs. NCBI nr
Match: XP_022140106.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 2   VTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDE 61
           VT + KFSV SWCYLA+ Y+QKDQL   VE LKKAA+LCP ELN+ KEILA FL+GKQD 
Sbjct: 368 VTGKSKFSVHSWCYLANAYIQKDQLQHTVEALKKAATLCPPELNHFKEILATFLEGKQDV 427

Query: 62  EETEKVVNLLREKDDSHPARAHDILVE 89
           +E EKVV LLR + +S    AHD+L++
Sbjct: 428 KEAEKVVGLLRAEANS--LFAHDVLID 452

[Close]

BLAST of CsaV3_1G012260 vs. TrEMBL
Match: tr|A0A1S3B572|A0A1S3B572_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           +V VRGKFSV+SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNY KEILAAF DGKQD
Sbjct: 367 IVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQD 426

Query: 61  EEETEKVVNLLREKDDSHPARAHDILVER 90
            EE EKVVNLLREKD+ +PARAHDILVER
Sbjct: 427 VEEAEKVVNLLREKDNLNPARAHDILVER 455

[Close]

BLAST of CsaV3_1G012260 vs. TrEMBL
Match: tr|A0A0A0LV44|A0A0A0LV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-35
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           MV VR KFSV+SWCYLASGYLQKDQLPQAVETLK AAS+CPS LNY KEILAAFLDGKQD
Sbjct: 367 MVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAFLDGKQD 426

Query: 61  EEETEKVVNLLREKDDSHPARAHDILV 88
            EETEKVVNLLREKDDSHPARAHD +V
Sbjct: 427 VEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of CsaV3_1G012260 vs. TrEMBL
Match: tr|A0A0A0LSC2|A0A0A0LSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.4e-33
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 10  VKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 69
           V ++C  ASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 70  LLREKDDSHPARAHDILVER 90
           LLREKDDSHPARAHDILVER
Sbjct: 292 LLREKDDSHPARAHDILVER 311

[Close]

BLAST of CsaV3_1G012260 vs. TrEMBL
Match: tr|A0A1S3B6G4|A0A1S3B6G4_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486307 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.4e-33
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1   MVTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQD 60
           M+TVR KFSVKSWCY+ASGYLQKDQLP+AVETLK AASLCPS+L+Y KEILAAFLDGKQD
Sbjct: 373 MMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEILAAFLDGKQD 432

Query: 61  EEETEKVVNLLREKDDSHPARAHDILV 88
            EE EKVVNLLREKD+SHPAR HD  +
Sbjct: 433 VEEVEKVVNLLREKDNSHPARGHDYAI 459

[Close]

BLAST of CsaV3_1G012260 vs. TrEMBL
Match: tr|A0A2N9I6A5|A0A2N9I6A5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47431 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 2   VTVRGKFSVKSWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAA---FLDGK 61
           +T  G+ S  SW YLASGYL  +Q+P+A+E +KKA ++CP     +KE LA    +L+GK
Sbjct: 371 MTRGGQPSADSWYYLASGYLDNNQIPKALEVMKKAVAVCPPGWRPSKETLATCLEYLEGK 430

Query: 62  QDEEETEKVVNLLR 73
            D E  +  +N LR
Sbjct: 431 GDTERADDFINSLR 444

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442434.1	1.6e-35	88.76	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_011653157.1	1.0e-34	88.51	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
KGN64673.1	9.7e-33	93.75	hypothetical protein Csa_1G073800 [Cucumis sativus]	[more]
XP_008442448.1	1.3e-32	82.76	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_022140106.1	1.9e-20	63.22	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momor...	[more]

BLAST of CsaV3_1G012260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G012260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B572\|A0A1S3B572_CUCME	1.1e-35	88.76	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LV44\|A0A0A0LV44_CUCSA	6.8e-35	88.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]
tr\|A0A0A0LSC2\|A0A0A0LSC2_CUCSA	6.4e-33	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1	[more]
tr\|A0A1S3B6G4\|A0A1S3B6G4_CUCME	8.4e-33	82.76	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A2N9I6A5\|A0A2N9I6A5_FAGSY	2.1e-07	44.59	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47431 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012260.1	CsaV3_1G012260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 10..43 score: 9.145
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 10..43 score: 8.654

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012260	Bhi08G001277	Wax gourd	cucwgoB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G012260	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012260	Cucumber (Gy14) v2	cgybcucB248
CsaV3_1G012260	Cucumber (Gy14) v1	cgycucB018
CsaV3_1G012260	Cucumber (Gy14) v1	cgycucB165
CsaV3_1G012260	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB0011
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB0249
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB0465
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB0515
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB0774
CsaV3_1G012260	Cucurbita maxima (Rimu)	cmacucB1005
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0000
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0235
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0503
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0759
CsaV3_1G012260	Cucurbita moschata (Rifu)	cmocucB0989
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0060
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0585
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0624
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0668
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0812
CsaV3_1G012260	Cucurbita pepo (Zucchini)	cpecucB0953
CsaV3_1G012260	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012260	Wild cucumber (PI 183967)	cpicucB202
CsaV3_1G012260	Wild cucumber (PI 183967)	cpicucB310
CsaV3_1G012260	Bottle gourd (USVL1VR-Ls)	cuclsiB020
CsaV3_1G012260	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G012260	Bottle gourd (USVL1VR-Ls)	cuclsiB056
CsaV3_1G012260	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G012260	Melon (DHL92) v3.5.1	cucmeB092
CsaV3_1G012260	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G012260	Melon (DHL92) v3.6.1	cucmedB085
CsaV3_1G012260	Watermelon (Charleston Gray)	cucwcgB012
CsaV3_1G012260	Watermelon (Charleston Gray)	cucwcgB015
CsaV3_1G012260	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G012260	Watermelon (97103) v1	cucwmB013
CsaV3_1G012260	Watermelon (97103) v1	cucwmB050
CsaV3_1G012260	Watermelon (97103) v1	cucwmB088
CsaV3_1G012260	Watermelon (97103) v2	cucwmbB001
CsaV3_1G012260	Watermelon (97103) v2	cucwmbB022
CsaV3_1G012260	Watermelon (97103) v2	cucwmbB030
CsaV3_1G012260	Wax gourd	cucwgoB026
CsaV3_1G012260	Wax gourd	cucwgoB080
CsaV3_1G012260	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_1G012260	Cucumber (Chinese Long) v3	cuccucB044
CsaV3_1G012260	Silver-seed gourd	carcucB0170
CsaV3_1G012260	Silver-seed gourd	carcucB0193
CsaV3_1G012260	Silver-seed gourd	carcucB0582
CsaV3_1G012260	Silver-seed gourd	carcucB0672
CsaV3_1G012260	Silver-seed gourd	carcucB0991