Bhi08M001277 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M001277
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like
Location	chr8 : 44901130 .. 44901426 (+)
Sequence length	297

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

mRNA sequence

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

Coding sequence (CDS)

ATGGAGAAGGCTGAAGACCTTATAAATGAGACAGTAACTAGAGGCAAGTTTTCTGTCGAGTCATGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCTCAGGCAGTTGATACACTGAAGAGAGCAGCCAGTTTGTGTCCATCTGAACTGAACCACTTCAAGGAAATTTTGGCAAATTTTTTGGGTGGCAAGCAAGATGTGAAAGAAGCTGAGGAAGTCGTTAATTTGTTGAGGGACAAAGCTAACTCTCTTTCTCCTCATGATGTATTGATAGAGTGTGATGACTGA

Protein sequence

MEKAEDLINETVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVNLLRDKANSLSPHDVLIECDD

Homology

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BLAST of Bhi08M001277 vs. TrEMBL
Match: tr|A0A1S3B572|A0A1S3B572_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.7e-32
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MEKAEDLINETV-TRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           +EKAE+L+NE V  RGKFSVESWCYLASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEI
Sbjct: 357 IEKAEELVNEIVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSP---HDVLIE 96
           LA F  GKQDV+EAE+VVNLLR+K N L+P   HD+L+E
Sbjct: 417 LAAFSDGKQDVEEAEKVVNLLREKDN-LNPARAHDILVE 454

[Close]

BLAST of Bhi08M001277 vs. TrEMBL
Match: tr|A0A0A0LV44|A0A0A0LV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-28
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEKAEDLINE-TVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE L+NE  + R KFSVESWCYLASGYLQKDQLPQAV+TLK AAS+CPS LN+ KEI
Sbjct: 357 MEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS--LSPHDVLI 95
           LA FL GKQDV+E E+VVNLLR+K +S     HD ++
Sbjct: 417 LAAFLDGKQDVEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of Bhi08M001277 vs. TrEMBL
Match: tr|A0A1S3B6G4|A0A1S3B6G4_CUCME (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486307 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           ME+AE L+ E +T R KFSV+SWCY+ASGYLQKDQLP+AV+TLK AASLCPS+L++ KEI
Sbjct: 363 MEEAEVLVYEMMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEI 422

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS 87
           LA FL GKQDV+E E+VVNLLR+K NS
Sbjct: 423 LAAFLDGKQDVEEVEKVVNLLREKDNS 449

[Close]

BLAST of Bhi08M001277 vs. TrEMBL
Match: tr|A0A0A0LSC2|A0A0A0LSC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 19  VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVN 78
           V+++C  ASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEILA FL GKQD +E E+VVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 79  LLRDKANS--LSPHDVLIE 96
           LLR+K +S     HD+L+E
Sbjct: 292 LLREKDDSHPARAHDILVE 310

[Close]

BLAST of Bhi08M001277 vs. TrEMBL
Match: tr|A0A2R6QLF3|A0A2R6QLF3_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17334 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-12
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 3   KAEDLINETVTRGKFS-VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILA 62
           KAE L+N+ + +G    V +WCYLA GYL  DQ+P+AVD LK+A ++CP      K+ L 
Sbjct: 361 KAEALVNKGIAKGGDPLVNTWCYLAGGYLDFDQVPKAVDALKKAITVCPPNSKPNKDTLV 420

Query: 63  ---NFLGGKQDVKEAEEVVNLLRDK-ANSLSPHDVLI 95
               +L G+ DV+ AEE ++LLR++   S S HD L+
Sbjct: 421 TCLEYLEGQGDVERAEEFISLLRNEGVFSASVHDKLL 457

[Close]

BLAST of Bhi08M001277 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1   MEKAEDLINETV-TRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           +EKAE+L+NE V  RGKFSVESWCYLASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEI
Sbjct: 357 IEKAEELVNEIVNVRGKFSVESWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSP---HDVLIE 96
           LA F  GKQDV+EAE+VVNLLR+K N L+P   HD+L+E
Sbjct: 417 LAAFSDGKQDVEEAEKVVNLLREKDN-LNPARAHDILVE 454

[Close]

BLAST of Bhi08M001277 vs. NCBI nr
Match: XP_022140106.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 71/99 (71.72%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE LIN+ VT + KFSV SWCYLA+ Y+QKDQL   V+ LK+AA+LCP ELNHFKEI
Sbjct: 357 MEKAEALINKAVTGKSKFSVHSWCYLANAYIQKDQLQHTVEALKKAATLCPPELNHFKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANSLSPHDVLIECDD 99
           LA FL GKQDVKEAE+VV LLR +ANSL  HDVLI+C D
Sbjct: 417 LATFLEGKQDVKEAEKVVGLLRAEANSLFAHDVLIDCGD 455

[Close]

BLAST of Bhi08M001277 vs. NCBI nr
Match: XP_011653157.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus] >KGN64672.1 hypothetical protein Csa_1G073790 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1   MEKAEDLINE-TVTRGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           MEKAE L+NE  + R KFSVESWCYLASGYLQKDQLPQAV+TLK AAS+CPS LN+ KEI
Sbjct: 357 MEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEI 416

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS--LSPHDVLI 95
           LA FL GKQDV+E E+VVNLLR+K +S     HD ++
Sbjct: 417 LAAFLDGKQDVEETEKVVNLLREKDDSHPARAHDYIV 453

[Close]

BLAST of Bhi08M001277 vs. NCBI nr
Match: XP_008442448.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   MEKAEDLINETVT-RGKFSVESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEI 60
           ME+AE L+ E +T R KFSV+SWCY+ASGYLQKDQLP+AV+TLK AASLCPS+L++ KEI
Sbjct: 363 MEEAEVLVYEMMTVRRKFSVKSWCYIASGYLQKDQLPEAVETLKIAASLCPSKLDYVKEI 422

Query: 61  LANFLGGKQDVKEAEEVVNLLRDKANS 87
           LA FL GKQDV+E E+VVNLLR+K NS
Sbjct: 423 LAAFLDGKQDVEEVEKVVNLLREKDNS 449

[Close]

BLAST of Bhi08M001277 vs. NCBI nr
Match: KGN64673.1 (hypothetical protein Csa_1G073800 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 19  VESWCYLASGYLQKDQLPQAVDTLKRAASLCPSELNHFKEILANFLGGKQDVKEAEEVVN 78
           V+++C  ASGYLQKDQLPQAV+TLK+AASLCPSELN+ KEILA FL GKQD +E E+VVN
Sbjct: 232 VDAYCRAASGYLQKDQLPQAVETLKKAASLCPSELNYAKEILAAFLDGKQDEEETEKVVN 291

Query: 79  LLRDKANS--LSPHDVLIE 96
           LLR+K +S     HD+L+E
Sbjct: 292 LLREKDDSHPARAHDILVE 310

The following BLAST results are available for this feature:

BLAST of Bhi08M001277 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08M001277 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08M001277 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B572\|A0A1S3B572_CUCME	7.7e-32	75.76	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LV44\|A0A0A0LV44_CUCSA	6.8e-28	70.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]
tr\|A0A1S3B6G4\|A0A1S3B6G4_CUCME	8.3e-26	72.41	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LSC2\|A0A0A0LSC2_CUCSA	1.0e-20	68.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073800 PE=4 SV=1	[more]
tr\|A0A2R6QLF3\|A0A2R6QLF3_ACTCH	8.9e-12	44.33	Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi...	[more]

BLAST of Bhi08M001277 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442434.1	1.2e-31	75.76	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_022140106.1	4.4e-31	71.72	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momor...	[more]
XP_011653157.1	1.0e-27	70.10	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_008442448.1	1.2e-25	72.41	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
KGN64673.1	1.6e-20	68.35	hypothetical protein Csa_1G073800 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G001277	Bhi08G001277	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M001277.exon1	Bhi08M001277.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M001277	cds.Bhi08M001277	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M001277	Bhi08M001277-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..94 e-value: 4.2E-6 score: 28.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 2..83
None	No IPR available	PANTHER	PTHR24015:SF1625	SUBFAMILY NOT NAMED	coord: 1..85
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..85
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 1..52 score: 9.833
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 19..52 score: 9.086