Bhi07G001445 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07G001445
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	sufE-like protein 2, chloroplastic
Location	chr7 : 49210684 .. 49210878 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCTAAAAAACCTAGGGCAATGAATCCTGAACCAGTCGTGGAAAAGTTTAAACAACTGAATGGTGAATTCAAGTCCCTAAAGGAGCCAATTGATCGACTGAAAAGGCTATTGTATTACGCTATGCTTCTTGTTCCAATGGATGATTCGGCTCGTGTGGATGGAAACAGAGTGGCGGGATGTATGACTTAG

mRNA sequence

ATGCGATCTAAAAAACCTAGGGCAATGAATCCTGAACCAGTCGTGGAAAAGTTTAAACAACTGAATGGTGAATTCAAGTCCCTAAAGGAGCCAATTGATCGACTGAAAAGGCTATTGTATTACGCTATGCTTCTTGTTCCAATGGATGATTCGGCTCGTGTGGATGGAAACAGAGTGGCGGGATGTATGACTTAG

Coding sequence (CDS)

ATGCGATCTAAAAAACCTAGGGCAATGAATCCTGAACCAGTCGTGGAAAAGTTTAAACAACTGAATGGTGAATTCAAGTCCCTAAAGGAGCCAATTGATCGACTGAAAAGGCTATTGTATTACGCTATGCTTCTTGTTCCAATGGATGATTCGGCTCGTGTGGATGGAAACAGAGTGGCGGGATGTATGACTTAG

Protein sequence

MRSKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT

Homology

[Close]

BLAST of Bhi07G001445 vs. Swiss-Prot
Match: sp|Q9FXE3|SUFE2_ARATH (SufE-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SUFE2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-09
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 16  EKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           +K + L  EF+SL EPIDR+KRLL YA  L P+D+SAR+  NRV GC T
Sbjct: 76  DKLRILVSEFRSLTEPIDRVKRLLNYAATLAPLDESARISENRVTGCTT 124

[Close]

BLAST of Bhi07G001445 vs. Swiss-Prot
Match: sp|Q9FGS4|NADA_ARATH (Quinolinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=QS PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-07
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 3   SKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGC 62
           S    +   E V  K ++L  EFKSL EPIDRLK +L+YA LL  M +S++ + NRV GC
Sbjct: 73  SSSSSSQTTELVPYKLQRLVKEFKSLTEPIDRLKWVLHYASLLPQMPESSKTESNRVMGC 132

[Close]

BLAST of Bhi07G001445 vs. TAIR10
Match: AT1G67810.1 (sulfur E2)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-10
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 16  EKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           +K + L  EF+SL EPIDR+KRLL YA  L P+D+SAR+  NRV GC T
Sbjct: 76  DKLRILVSEFRSLTEPIDRVKRLLNYAATLAPLDESARISENRVTGCTT 124

[Close]

BLAST of Bhi07G001445 vs. TAIR10
Match: AT5G50210.1 (quinolinate synthase)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-08
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 3   SKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGC 62
           S    +   E V  K ++L  EFKSL EPIDRLK +L+YA LL  M +S++ + NRV GC
Sbjct: 73  SSSSSSQTTELVPYKLQRLVKEFKSLTEPIDRLKWVLHYASLLPQMPESSKTESNRVMGC 132

[Close]

BLAST of Bhi07G001445 vs. TrEMBL
Match: tr|A0A2G3B8Y0|A0A2G3B8Y0_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_28209 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14  VVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           VV+K K L+ EF+SL EPIDR+KRLL+YA +L P+ +SA+V GNRV GC T
Sbjct: 92  VVDKVKCLSLEFRSLSEPIDRVKRLLHYASILPPLCESAKVQGNRVLGCTT 142

[Close]

BLAST of Bhi07G001445 vs. TrEMBL
Match: tr|A0A2G2YEY4|A0A2G2YEY4_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_27797 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14  VVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           VV+K K L+ EF+SL EPIDR+KRLL+YA +L P+ +SA+V GNRV GC T
Sbjct: 92  VVDKVKCLSLEFRSLSEPIDRVKRLLHYASILPPLCESAKVQGNRVLGCTT 142

[Close]

BLAST of Bhi07G001445 vs. TrEMBL
Match: tr|A0A1U8EXF3|A0A1U8EXF3_CAPAN (sufE-like protein 2, chloroplastic isoform X4 OS=Capsicum annuum OX=4072 GN=LOC107848348 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14  VVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           VV+K K L+ EF+SL EPIDR+KRLL+YA +L P+ +SA+V GNRV GC T
Sbjct: 92  VVDKVKCLSLEFRSLSEPIDRVKRLLHYASILPPLCESAKVQGNRVLGCTT 142

[Close]

BLAST of Bhi07G001445 vs. TrEMBL
Match: tr|A0A1U8EN20|A0A1U8EN20_CAPAN (sufE-like protein 2, chloroplastic isoform X3 OS=Capsicum annuum OX=4072 GN=LOC107848348 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14  VVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           VV+K K L+ EF+SL EPIDR+KRLL+YA +L P+ +SA+V GNRV GC T
Sbjct: 92  VVDKVKCLSLEFRSLSEPIDRVKRLLHYASILPPLCESAKVQGNRVLGCTT 142

[Close]

BLAST of Bhi07G001445 vs. TrEMBL
Match: tr|A0A1U8EQB8|A0A1U8EQB8_CAPAN (sufE-like protein 2, chloroplastic isoform X2 OS=Capsicum annuum OX=4072 GN=LOC107848348 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14  VVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGCMT 65
           VV+K K L+ EF+SL EPIDR+KRLL+YA +L P+ +SA+V GNRV GC T
Sbjct: 92  VVDKVKCLSLEFRSLSEPIDRVKRLLHYASILPPLCESAKVQGNRVLGCTT 142

[Close]

BLAST of Bhi07G001445 vs. NCBI nr
Match: XP_022966843.1 (sufE-like protein 2, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 2   RSKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAG 61
           RS+KP AM PE V +K ++L  EF++L++PIDR+KRLL+YA  L PMD SA V GNRVAG
Sbjct: 69  RSQKPSAMIPELVADKLERLVSEFEALEKPIDRVKRLLHYATFLAPMDKSALVSGNRVAG 128

Query: 62  C 63
           C
Sbjct: 129 C 129

[Close]

BLAST of Bhi07G001445 vs. NCBI nr
Match: XP_022945584.1 (sufE-like protein 2, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MRSKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVA 60
           MRS+KP  M PE V +K ++L  EF++L++PIDR+K+LL+YA  L PMD+SARV  NRVA
Sbjct: 68  MRSQKPSGMIPELVADKLERLVSEFEALEKPIDRVKKLLHYATFLSPMDESARVSENRVA 127

Query: 61  GC 63
           GC
Sbjct: 128 GC 129

[Close]

BLAST of Bhi07G001445 vs. NCBI nr
Match: XP_023542315.1 (sufE-like protein 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 2   RSKKPRAMNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAG 61
           RS+KP  M PE V +K ++L  EF++L++PIDR+KRLL+YA  L PMD+SARV  NRVAG
Sbjct: 69  RSQKPSGMIPELVADKLERLVSEFEALEKPIDRVKRLLHYATFLAPMDESARVSENRVAG 128

Query: 62  C 63
           C
Sbjct: 129 C 129

[Close]

BLAST of Bhi07G001445 vs. NCBI nr
Match: XP_023542316.1 (sufE-like protein 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 9  MNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGC 63
          M PE V +K ++L  EF++L++PIDR+KRLL+YA  L PMD+SARV  NRVAGC
Sbjct: 1  MIPELVADKLERLVSEFEALEKPIDRVKRLLHYATFLAPMDESARVSENRVAGC 54

[Close]

BLAST of Bhi07G001445 vs. NCBI nr
Match: XP_022966844.1 (sufE-like protein 2, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-09
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 9  MNPEPVVEKFKQLNGEFKSLKEPIDRLKRLLYYAMLLVPMDDSARVDGNRVAGC 63
          M PE V +K ++L  EF++L++PIDR+KRLL+YA  L PMD SA V GNRVAGC
Sbjct: 1  MIPELVADKLERLVSEFEALEKPIDRVKRLLHYATFLAPMDKSALVSGNRVAGC 54

The following BLAST results are available for this feature:

BLAST of Bhi07G001445 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FXE3\|SUFE2_ARATH	2.8e-09	59.18	SufE-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SUFE2 PE=2...	[more]
sp\|Q9FGS4\|NADA_ARATH	4.4e-07	48.33	Quinolinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=QS PE=1 S...	[more]

BLAST of Bhi07G001445 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67810.1	1.5e-10	59.18	sulfur E2	[more]
AT5G50210.1	2.5e-08	48.33	quinolinate synthase	[more]

BLAST of Bhi07G001445 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G3B8Y0\|A0A2G3B8Y0_CAPCH	2.3e-08	62.75	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_28209 PE=4 SV=1	[more]
tr\|A0A2G2YEY4\|A0A2G2YEY4_CAPAN	2.3e-08	62.75	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_27797 PE=4 SV=1	[more]
tr\|A0A1U8EXF3\|A0A1U8EXF3_CAPAN	2.3e-08	62.75	sufE-like protein 2, chloroplastic isoform X4 OS=Capsicum annuum OX=4072 GN=LOC1...	[more]
tr\|A0A1U8EN20\|A0A1U8EN20_CAPAN	2.3e-08	62.75	sufE-like protein 2, chloroplastic isoform X3 OS=Capsicum annuum OX=4072 GN=LOC1...	[more]
tr\|A0A1U8EQB8\|A0A1U8EQB8_CAPAN	2.3e-08	62.75	sufE-like protein 2, chloroplastic isoform X2 OS=Capsicum annuum OX=4072 GN=LOC1...	[more]

BLAST of Bhi07G001445 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966843.1	1.5e-11	62.30	sufE-like protein 2, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022945584.1	2.5e-11	59.68	sufE-like protein 2, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_023542315.1	2.5e-11	60.66	sufE-like protein 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023542316.1	3.1e-09	61.11	sufE-like protein 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022966844.1	5.3e-09	61.11	sufE-like protein 2, chloroplastic isoform X2 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003808	Fe-S_metab-assoc_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0051176	positive regulation of sulfur metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0044281	small molecule metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0072525	pyridine-containing compound biosynthetic process
biological_process	GO:0034628	'de novo' NAD biosynthetic process from aspartate
biological_process	GO:0019805	quinolinate biosynthetic process
biological_process	GO:0051347	positive regulation of transferase activity
biological_process	GO:0009435	NAD biosynthetic process
biological_process	GO:0009060	aerobic respiration
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008987	quinolinate synthetase A activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi07M001445	Bhi07M001445	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.1010.10		coord: 3..64 e-value: 1.1E-9 score: 39.7
None	No IPR available	PANTHER	PTHR43597:SF2	SUFE-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 10..64
None	No IPR available	SUPERFAMILY	SSF82649	SufE/NifU	coord: 8..63
IPR003808	Fe-S metabolism associated domain, SufE-like	PFAM	PF02657	SufE	coord: 24..63 e-value: 1.5E-5 score: 24.7
IPR003808	Fe-S metabolism associated domain, SufE-like	PANTHER	PTHR43597	FAMILY NOT NAMED	coord: 10..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi07G001445	MELO3C002307	Melon (DHL92) v3.5.1	mewgoB189
Bhi07G001445	ClCG08G017640	Watermelon (Charleston Gray)	wcgwgoB648
Bhi07G001445	ClCG05G025860	Watermelon (Charleston Gray)	wcgwgoB467
Bhi07G001445	CSPI01G08900	Wild cucumber (PI 183967)	cpiwgoB069
Bhi07G001445	Cucsa.098860	Cucumber (Gy14) v1	cgywgoB141
Bhi07G001445	CmaCh18G007570	Cucurbita maxima (Rimu)	cmawgoB0543
Bhi07G001445	CmoCh18G007610	Cucurbita moschata (Rifu)	cmowgoB0539
Bhi07G001445	Lsi08G016380	Bottle gourd (USVL1VR-Ls)	lsiwgoB619
Bhi07G001445	Lsi04G006030	Bottle gourd (USVL1VR-Ls)	lsiwgoB380
Bhi07G001445	Cp4.1LG09g05410	Cucurbita pepo (Zucchini)	cpewgoB0054
Bhi07G001445	CsGy1G008820	Cucumber (Gy14) v2	cgybwgoB065
Bhi07G001445	MELO3C002307.2	Melon (DHL92) v3.6.1	medwgoB191
Bhi07G001445	Carg14508	Silver-seed gourd	carwgoB0852
Bhi07G001445	CsaV3_1G008930	Cucumber (Chinese Long) v3	cucwgoB073
Bhi07G001445	Cla010033	Watermelon (97103) v1	wgowmB550
Bhi07G001445	Cla97C05G108090	Watermelon (97103) v2	wgowmbB530
Bhi07G001445	Cla97C08G161340	Watermelon (97103) v2	wgowmbB542

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Bhi07G001445	Bhi04G000581	Wax gourd	wgowgoB085
Bhi07G001445	Bhi08G001356	Wax gourd	wgowgoB118

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi07G001445	Cucumber (Gy14) v1	cgywgoB581
Bhi07G001445	Cucumber (Gy14) v1	cgywgoB787
Bhi07G001445	Cucumber (Gy14) v2	cgybwgoB188
Bhi07G001445	Cucumber (Gy14) v2	cgybwgoB486
Bhi07G001445	Cucurbita maxima (Rimu)	cmawgoB0891
Bhi07G001445	Cucurbita maxima (Rimu)	cmawgoB0959
Bhi07G001445	Cucurbita moschata (Rifu)	cmowgoB0890
Bhi07G001445	Cucurbita moschata (Rifu)	cmowgoB0958
Bhi07G001445	Cucurbita pepo (Zucchini)	cpewgoB0555
Bhi07G001445	Wild cucumber (PI 183967)	cpiwgoB196
Bhi07G001445	Wild cucumber (PI 183967)	cpiwgoB516
Bhi07G001445	Cucumber (Chinese Long) v3	cucwgoB202
Bhi07G001445	Cucumber (Chinese Long) v3	cucwgoB523
Bhi07G001445	Cucumber (Chinese Long) v2	cuwgoB196
Bhi07G001445	Cucumber (Chinese Long) v2	cuwgoB512
Bhi07G001445	Melon (DHL92) v3.6.1	medwgoB071
Bhi07G001445	Melon (DHL92) v3.6.1	medwgoB363
Bhi07G001445	Melon (DHL92) v3.5.1	mewgoB072
Bhi07G001445	Melon (DHL92) v3.5.1	mewgoB362
Bhi07G001445	Silver-seed gourd	carwgoB0312