Bhi05G001558 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001558
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	protein TIC 20, chloroplastic-like
Location	chr5 : 57290914 .. 57291572 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATATTGATATCACAACTTTCTGCAGCAGCATCCCCACATCTATCTGGGGAACAAGGCAGTCTATTCCACAAACTTCCACTTTTACCTCCAAGAAATTGTGCTGGAAAGAGTCCTCAAGCCTTCAGAGATGACTCTTACAGTGTAAAACGCCACTCTGGGGTCACCCAAAAACCAGAATGGTGGTGGAGAACTTTGGCTTGTGTTCCATACTTGATGGCTTTGCAGATGTCAAGTACAGCATATTACCTCTTGCCCTTGTTGGAGCACTTGGACGTTGATAATTTGATATTTTATATCCCCGGATTCGTTCAGAAGTTACCGTGGTGGTTCCCCATGTTGTACTTCAACCTCGCATACTTCGGAGTCGTGAGGAATAAAGAATTGCCTCATTTCATTCGGTTCCATGTGATGATGGGGATGTTATTAGAAACCTTGCTAGACATCGTATGGTATTCAAGCAATTTCATGCCACTCATACATTACAATGGTACATATGCAATGCAATATTGGGCAGCAGTGGGGTTCATCTACATTTCCAGCTTGTTGGTGTGTATAAGGAGTTCTCTCTTAGGGACTTATGCCAAAATACCATTCATTTTCGAAAACGCACTTATTCATACATTCTTTAGTATAGGACGATATTATCGACCGTTCTAG

mRNA sequence

GAATATTGATATCACAACTTTCTGCAGCAGCATCCCCACATCTATCTGGGGAACAAGGCAGTCTATTCCACAAACTTCCACTTTTACCTCCAAGAAATTGTGCTGGAAAGAGTCCTCAAGCCTTCAGAGATGACTCTTACAGTGTAAAACGCCACTCTGGGGTCACCCAAAAACCAGAATGGTGGTGGAGAACTTTGGCTTGTGTTCCATACTTGATGGCTTTGCAGATGTCAAGTACAGCATATTACCTCTTGCCCTTGTTGGAGCACTTGGACGTTGATAATTTGATATTTTATATCCCCGGATTCGTTCAGAAGTTACCGTGGTGGTTCCCCATGTTGTACTTCAACCTCGCATACTTCGGAGTCGTGAGGAATAAAGAATTGCCTCATTTCATTCGGTTCCATGTGATGATGGGGATGTTATTAGAAACCTTGCTAGACATCGTATGGTATTCAAGCAATTTCATGCCACTCATACATTACAATGGTACATATGCAATGCAATATTGGGCAGCAGTGGGGTTCATCTACATTTCCAGCTTGTTGGTGTGTATAAGGAGTTCTCTCTTAGGGACTTATGCCAAAATACCATTCATTTTCGAAAACGCACTTATTCATACATTCTTTAGTATAGGACGATATTATCGACCGTTCTAG

Coding sequence (CDS)

GAATATTGATATCACAACTTTCTGCAGCAGCATCCCCACATCTATCTGGGGAACAAGGCAGTCTATTCCACAAACTTCCACTTTTACCTCCAAGAAATTGTGCTGGAAAGAGTCCTCAAGCCTTCAGAGATGACTCTTACAGTGTAAAACGCCACTCTGGGGTCACCCAAAAACCAGAATGGTGGTGGAGAACTTTGGCTTGTGTTCCATACTTGATGGCTTTGCAGATGTCAAGTACAGCATATTACCTCTTGCCCTTGTTGGAGCACTTGGACGTTGATAATTTGATATTTTATATCCCCGGATTCGTTCAGAAGTTACCGTGGTGGTTCCCCATGTTGTACTTCAACCTCGCATACTTCGGAGTCGTGAGGAATAAAGAATTGCCTCATTTCATTCGGTTCCATGTGATGATGGGGATGTTATTAGAAACCTTGCTAGACATCGTATGGTATTCAAGCAATTTCATGCCACTCATACATTACAATGGTACATATGCAATGCAATATTGGGCAGCAGTGGGGTTCATCTACATTTCCAGCTTGTTGGTGTGTATAAGGAGTTCTCTCTTAGGGACTTATGCCAAAATACCATTCATTTTCGAAAACGCACTTATTCATACATTCTTTAGTATAGGACGATATTATCGACCGTTCTAG

Protein sequence

ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF

Homology

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BLAST of Bhi05G001558 vs. Swiss-Prot
Match: sp|Q9ZQZ9|TI204_ARATH (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.2e-53
Identity = 103/215 (47.91%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 4   SQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWR 63
           +QL A   P L+   G   H+ P+ P R          +DD + +K    + ++PEWWWR
Sbjct: 79  NQLFANGLPPLA--PGLRRHRRPIEPAR--------VAKDDFFKIKLPK-IAERPEWWWR 138

Query: 64  TLACVPYLMALQMSSTAYYLLPLLE-HLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 123
           TLACVPYL++LQ+S   +Y+ P LE H  + ++I++IPG + + P WF M+Y  L Y  V
Sbjct: 139 TLACVPYLISLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWV 198

Query: 124 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 183
           V+NKELPH++RFH+MMGMLLET L ++W +SNF PLIH+ G + M YW A+GF YI  LL
Sbjct: 199 VKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLL 258

Query: 184 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRP 218
            CIR +L G YA+IPF+ + A IHT F++G + RP
Sbjct: 259 ECIRCALAGVYAQIPFMTDAASIHTLFNLGGFQRP 282

[Close]

BLAST of Bhi05G001558 vs. Swiss-Prot
Match: sp|Q8GZ79|TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 100/207 (48.31%), Postives = 132/207 (63.77%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           +S LSA++S  L+GEQGSL   LP+LP R     +P+A +D   S  R   +T+KP+WWW
Sbjct: 66  LSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSF-RFPPMTKKPQWWW 125

Query: 63  RTLACVPYLMAL----QMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLA 122
           RTLAC+PYLM L      + TAY+L P LE  D + L +   G + +LP WF M YF +A
Sbjct: 126 RTLACLPYLMPLHETWMYAETAYHLHPFLE--DFEFLTYPFLGAIGRLPSWFLMAYFFVA 185

Query: 123 YFGVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYI 182
           Y G+VR KE PHF RFHV+MGMLLE  L ++   S +MPL  Y G + M +W AV F Y+
Sbjct: 186 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYL 245

Query: 183 SSLLVCIRSSLLGTYAKIPFIFENALI 206
            ++L  IR +L G YA IPF+ + A I
Sbjct: 246 FTVLESIRCALAGMYADIPFVCDAAYI 269

[Close]

BLAST of Bhi05G001558 vs. Swiss-Prot
Match: sp|Q9ZST8|TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33
Identity = 78/206 (37.86%), Postives = 117/206 (56.80%), Query Frame = 0


Query: 4   SQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWR 63
           + +SA +S  LSG Q  L   +P+LP  + +  +P+A +D S    R   +T+KP WWWR
Sbjct: 47  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKDSSGF--RFPPMTKKPRWWWR 106

Query: 64  TLACVPYLM----ALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAY 123
           TL+C+PYL+    A   + TAY+L P + +       F +   +  LP W  + YF +AY
Sbjct: 107 TLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMA--IGTLPRWSLIAYFLIAY 166

Query: 124 FGVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYIS 183
             +VR KE PHF RFHV +GML+E  L +    S +MP   Y G   M +W    F+++ 
Sbjct: 167 LTIVRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLF 226

Query: 184 SLLVCIRSSLLGTYAKIPFIFENALI 206
           + + CIR +L+G YA +PF+ + A I
Sbjct: 227 TTIECIRCALVGMYADVPFVCDAAYI 248

[Close]

BLAST of Bhi05G001558 vs. TAIR10
Match: AT4G03320.1 (translocon at the inner envelope membrane of chloroplasts 20-IV)

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-54
Identity = 103/215 (47.91%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 4   SQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWR 63
           +QL A   P L+   G   H+ P+ P R          +DD + +K    + ++PEWWWR
Sbjct: 79  NQLFANGLPPLA--PGLRRHRRPIEPAR--------VAKDDFFKIKLPK-IAERPEWWWR 138

Query: 64  TLACVPYLMALQMSSTAYYLLPLLE-HLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 123
           TLACVPYL++LQ+S   +Y+ P LE H  + ++I++IPG + + P WF M+Y  L Y  V
Sbjct: 139 TLACVPYLISLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWV 198

Query: 124 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 183
           V+NKELPH++RFH+MMGMLLET L ++W +SNF PLIH+ G + M YW A+GF YI  LL
Sbjct: 199 VKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLL 258

Query: 184 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRP 218
            CIR +L G YA+IPF+ + A IHT F++G + RP
Sbjct: 259 ECIRCALAGVYAQIPFMTDAASIHTLFNLGGFQRP 282

[Close]

BLAST of Bhi05G001558 vs. TAIR10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 100/207 (48.31%), Postives = 132/207 (63.77%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           +S LSA++S  L+GEQGSL   LP+LP R     +P+A +D   S  R   +T+KP+WWW
Sbjct: 66  LSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSF-RFPPMTKKPQWWW 125

Query: 63  RTLACVPYLMAL----QMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLA 122
           RTLAC+PYLM L      + TAY+L P LE  D + L +   G + +LP WF M YF +A
Sbjct: 126 RTLACLPYLMPLHETWMYAETAYHLHPFLE--DFEFLTYPFLGAIGRLPSWFLMAYFFVA 185

Query: 123 YFGVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYI 182
           Y G+VR KE PHF RFHV+MGMLLE  L ++   S +MPL  Y G + M +W AV F Y+
Sbjct: 186 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYL 245

Query: 183 SSLLVCIRSSLLGTYAKIPFIFENALI 206
            ++L  IR +L G YA IPF+ + A I
Sbjct: 246 FTVLESIRCALAGMYADIPFVCDAAYI 269

[Close]

BLAST of Bhi05G001558 vs. TAIR10
Match: AT1G04945.3 (HIT-type Zinc finger family protein)

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-40
Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           +S LSA++S  L+GEQGSL   LP+LP R     +P+A +D   S  R   +T+KP+WWW
Sbjct: 66  LSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSF-RFPPMTKKPQWWW 125

Query: 63  RTLACVPYLMAL----QMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLA 122
           RTLAC+PYLM L      + TAY+L P LE  D + L +   G + +LP WF M YF +A
Sbjct: 126 RTLACLPYLMPLHETWMYAETAYHLHPFLE--DFEFLTYPFLGAIGRLPSWFLMAYFFVA 185

Query: 123 YFGVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYI 182
           Y G+VR KE PHF RFHV+MGMLLE  L ++   S +MPL  Y G + M +W AV F Y+
Sbjct: 186 YLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYL 245

Query: 183 SSLLVCIRSSL 190
            ++L  IR +L
Sbjct: 246 FTVLESIRCAL 253

[Close]

BLAST of Bhi05G001558 vs. TrEMBL
Match: tr|A0A1S3C1G8|A0A1S3C1G8_CUCME (protein TIC 20-IV, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495554 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.2e-111
Identity = 196/218 (89.91%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEW 60
           +LIS +S+AASPHLSGEQG LFHKLPL PPRN A K P+AFRDDSYSVKR SGVTQKPEW
Sbjct: 71  MLISHISSAASPHLSGEQGRLFHKLPLWPPRNHARKGPRAFRDDSYSVKRQSGVTQKPEW 130

Query: 61  WWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYF 120
           W RTLACVPYLMA+QMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYF
Sbjct: 131 WLRTLACVPYLMAVQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYF 190

Query: 121 GVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISS 180
           GVVRNKELPHF RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAVGFIYISS
Sbjct: 191 GVVRNKELPHFFRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVGFIYISS 250

Query: 181 LLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           LLVCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 251 LLVCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 288

[Close]

BLAST of Bhi05G001558 vs. TrEMBL
Match: tr|A0A1S4E0E4|A0A1S4E0E4_CUCME (protein TIC 20-IV, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495554 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 2.2e-111
Identity = 196/218 (89.91%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEW 60
           +LIS +S+AASPHLSGEQG LFHKLPL PPRN A K P+AFRDDSYSVKR SGVTQKPEW
Sbjct: 69  MLISHISSAASPHLSGEQGRLFHKLPLWPPRNHARKGPRAFRDDSYSVKRQSGVTQKPEW 128

Query: 61  WWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYF 120
           W RTLACVPYLMA+QMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYF
Sbjct: 129 WLRTLACVPYLMAVQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYF 188

Query: 121 GVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISS 180
           GVVRNKELPHF RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAVGFIYISS
Sbjct: 189 GVVRNKELPHFFRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVGFIYISS 248

Query: 181 LLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           LLVCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 249 LLVCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 286

[Close]

BLAST of Bhi05G001558 vs. TrEMBL
Match: tr|A0A0A0K289|A0A0A0K289_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045570 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.1e-110
Identity = 195/216 (90.28%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           IS +SAAASP+LSGEQGSLFHKLPLLPPR  A K P+AFRDDSYSVKR SGVTQKP+WW 
Sbjct: 122 ISHISAAASPYLSGEQGSLFHKLPLLPPRKYAKKGPRAFRDDSYSVKRQSGVTQKPKWWL 181

Query: 63  RTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 122
           RTLACVPYLMALQMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYFGV
Sbjct: 182 RTLACVPYLMALQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYFGV 241

Query: 123 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 182
           VRNKELPHF+RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAV FIYISSLL
Sbjct: 242 VRNKELPHFVRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVAFIYISSLL 301

Query: 183 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           VCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 302 VCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 337

[Close]

BLAST of Bhi05G001558 vs. TrEMBL
Match: tr|B9RW66|B9RW66_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1176330 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.7e-61
Identity = 111/211 (52.61%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 8   AAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWRTLAC 67
           +AAS  L G+Q ++ H +P LP R  + + P+A++ D + +     + +KPEWWWRTLAC
Sbjct: 101 SAASTSLFGDQNNVLHGIPRLPTRRRSPELPRAYKSDFFRLP-FPVLAEKPEWWWRTLAC 160

Query: 68  VPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGVVRNKE 127
           +PYL++L MS T  ++ P LEH D   L++++PG V +LP +FPM+Y+ +A  GVV+NK+
Sbjct: 161 LPYLISLYMSDTGNFIQPFLEHYDYFGLVYFVPGAVSRLPAYFPMVYYYIALLGVVKNKQ 220

Query: 128 LPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLLVCIRS 187
           +PHF RFH+MMGMLLET L +VWY+SNF PLIH+NGTY M YWA VGF YI  LL C+R 
Sbjct: 221 VPHFFRFHLMMGMLLETALQVVWYTSNFFPLIHFNGTYGMYYWAGVGFAYILILLQCVRC 280

Query: 188 SLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           +L G YA++P I + AL+HT F+IG + RPF
Sbjct: 281 ALAGGYAQMPLISDAALVHTMFNIGGFQRPF 310

[Close]

BLAST of Bhi05G001558 vs. TrEMBL
Match: tr|A0A2C9V5T4|A0A2C9V5T4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G061600 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.9e-60
Identity = 117/216 (54.17%), Postives = 154/216 (71.30%), Query Frame = 0


Query: 4   SQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWWR 63
           SQLS AAS  L G+Q  L + +P LP R  +   P+A+++D +       + +KPEWWWR
Sbjct: 101 SQLS-AASASLFGDQDGLSYGIPRLPVRRRSSDLPKAYKNDFFRFP-FPVLAEKPEWWWR 160

Query: 64  TLACVPYLMALQMSSTAYYLLPLLEHLD-VDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 123
           TLAC+PYL+ALQ+S   Y++   LEH D +++LIF++PG V +LP WF M+Y  +AY G+
Sbjct: 161 TLACLPYLIALQISDAGYFIRSFLEHYDYLEDLIFFVPGAVSRLPTWFTMVYCYIAYIGI 220

Query: 124 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 183
           V+N+E PHF RFH+MMGMLLET + ++WY+SNF PLIHYNGTY M YWA VG  YI  LL
Sbjct: 221 VKNREWPHFFRFHLMMGMLLETAMQLIWYTSNFFPLIHYNGTYGMYYWAGVGLAYILVLL 280

Query: 184 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
            C+  +LLG YA IP I + ALIHT F+IG + RPF
Sbjct: 281 QCVSCALLGGYAHIPVISDAALIHTLFNIGGFQRPF 314

[Close]

BLAST of Bhi05G001558 vs. NCBI nr
Match: XP_008455368.1 (PREDICTED: protein TIC 20-IV, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 410.6 bits (1054), Expect = 3.3e-111
Identity = 196/218 (89.91%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEW 60
           +LIS +S+AASPHLSGEQG LFHKLPL PPRN A K P+AFRDDSYSVKR SGVTQKPEW
Sbjct: 71  MLISHISSAASPHLSGEQGRLFHKLPLWPPRNHARKGPRAFRDDSYSVKRQSGVTQKPEW 130

Query: 61  WWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYF 120
           W RTLACVPYLMA+QMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYF
Sbjct: 131 WLRTLACVPYLMAVQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYF 190

Query: 121 GVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISS 180
           GVVRNKELPHF RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAVGFIYISS
Sbjct: 191 GVVRNKELPHFFRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVGFIYISS 250

Query: 181 LLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           LLVCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 251 LLVCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 288

[Close]

BLAST of Bhi05G001558 vs. NCBI nr
Match: XP_016901684.1 (PREDICTED: protein TIC 20-IV, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 410.6 bits (1054), Expect = 3.3e-111
Identity = 196/218 (89.91%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEW 60
           +LIS +S+AASPHLSGEQG LFHKLPL PPRN A K P+AFRDDSYSVKR SGVTQKPEW
Sbjct: 69  MLISHISSAASPHLSGEQGRLFHKLPLWPPRNHARKGPRAFRDDSYSVKRQSGVTQKPEW 128

Query: 61  WWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYF 120
           W RTLACVPYLMA+QMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYF
Sbjct: 129 WLRTLACVPYLMAVQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYF 188

Query: 121 GVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISS 180
           GVVRNKELPHF RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAVGFIYISS
Sbjct: 189 GVVRNKELPHFFRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVGFIYISS 248

Query: 181 LLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           LLVCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 249 LLVCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 286

[Close]

BLAST of Bhi05G001558 vs. NCBI nr
Match: KGN43568.1 (hypothetical protein Csa_7G045570 [Cucumis sativus])

HSP 1 Score: 408.3 bits (1048), Expect = 1.6e-110
Identity = 195/216 (90.28%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           IS +SAAASP+LSGEQGSLFHKLPLLPPR  A K P+AFRDDSYSVKR SGVTQKP+WW 
Sbjct: 122 ISHISAAASPYLSGEQGSLFHKLPLLPPRKYAKKGPRAFRDDSYSVKRQSGVTQKPKWWL 181

Query: 63  RTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 122
           RTLACVPYLMALQMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYFGV
Sbjct: 182 RTLACVPYLMALQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYFGV 241

Query: 123 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 182
           VRNKELPHF+RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAV FIYISSLL
Sbjct: 242 VRNKELPHFVRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVAFIYISSLL 301

Query: 183 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           VCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 302 VCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 337

[Close]

BLAST of Bhi05G001558 vs. NCBI nr
Match: XP_004144571.2 (PREDICTED: protein TIC 20-IV, chloroplastic [Cucumis sativus])

HSP 1 Score: 408.3 bits (1048), Expect = 1.6e-110
Identity = 195/216 (90.28%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 3   ISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEWWW 62
           IS +SAAASP+LSGEQGSLFHKLPLLPPR  A K P+AFRDDSYSVKR SGVTQKP+WW 
Sbjct: 97  ISHISAAASPYLSGEQGSLFHKLPLLPPRKYAKKGPRAFRDDSYSVKRQSGVTQKPKWWL 156

Query: 63  RTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYFGV 122
           RTLACVPYLMALQMSSTAYYL+PLLEHLDVDNLIFY+PG VQ+LPWWFPMLYFNLAYFGV
Sbjct: 157 RTLACVPYLMALQMSSTAYYLMPLLEHLDVDNLIFYVPGSVQRLPWWFPMLYFNLAYFGV 216

Query: 123 VRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISSLL 182
           VRNKELPHF+RFHVMMGMLLET LDI+WY+SNFMPLIHYNGTYAMQYWAAV FIYISSLL
Sbjct: 217 VRNKELPHFVRFHVMMGMLLETSLDIIWYASNFMPLIHYNGTYAMQYWAAVAFIYISSLL 276

Query: 183 VCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           VCIRSSLLGTYAKIPFIFENALIHTFF+IGRYYRPF
Sbjct: 277 VCIRSSLLGTYAKIPFIFENALIHTFFNIGRYYRPF 312

[Close]

BLAST of Bhi05G001558 vs. NCBI nr
Match: XP_022952618.1 (protein TIC 20-IV, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 400.6 bits (1028), Expect = 3.4e-108
Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   ILISQLSAAASPHLSGEQGSLFHKLPLLPPRNCAGKSPQAFRDDSYSVKRHSGVTQKPEW 60
           +LIS LSAAASP L GEQGSLFHKLPLLPPR  AGKSPQ FRDDSY VKRHS VT+KPEW
Sbjct: 117 MLISHLSAAASPTLCGEQGSLFHKLPLLPPRKYAGKSPQVFRDDSYGVKRHSMVTKKPEW 176

Query: 61  WWRTLACVPYLMALQMSSTAYYLLPLLEHLDVDNLIFYIPGFVQKLPWWFPMLYFNLAYF 120
           WWRTLACVPYLMALQMSSTAYYLLPLLEHL+VDNLIFY+PG VQ LPWWFPMLYFNLAYF
Sbjct: 177 WWRTLACVPYLMALQMSSTAYYLLPLLEHLNVDNLIFYVPGAVQNLPWWFPMLYFNLAYF 236

Query: 121 GVVRNKELPHFIRFHVMMGMLLETLLDIVWYSSNFMPLIHYNGTYAMQYWAAVGFIYISS 180
           GVVRNKELPHFIRFHVMMGMLL T LDI+WY+SNFMPLIHYNGTY+MQYWAAVGFIYIS 
Sbjct: 237 GVVRNKELPHFIRFHVMMGMLLGTALDILWYTSNFMPLIHYNGTYSMQYWAAVGFIYISI 296

Query: 181 LLVCIRSSLLGTYAKIPFIFENALIHTFFSIGRYYRPF 219
           L +CIRSSLLGTYAKIPFI ENALIHTFFS GRY+RPF
Sbjct: 297 LSLCIRSSLLGTYAKIPFISENALIHTFFSTGRYFRPF 334

The following BLAST results are available for this feature:

BLAST of Bhi05G001558 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZQZ9\|TI204_ARATH	8.2e-53	47.91	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]
sp\|Q8GZ79\|TI201_ARATH	2.0e-43	48.31	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
sp\|Q9ZST8\|TIC20_PEA	5.5e-33	37.86	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]

BLAST of Bhi05G001558 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03320.1	4.5e-54	47.91	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]
AT1G04940.1	1.1e-44	48.31	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	3.7e-40	48.17	HIT-type Zinc finger family protein	[more]

BLAST of Bhi05G001558 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1G8\|A0A1S3C1G8_CUCME	2.2e-111	89.91	protein TIC 20-IV, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
tr\|A0A1S4E0E4\|A0A1S4E0E4_CUCME	2.2e-111	89.91	protein TIC 20-IV, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
tr\|A0A0A0K289\|A0A0A0K289_CUCSA	1.1e-110	90.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045570 PE=4 SV=1	[more]
tr\|B9RW66\|B9RW66_RICCO	2.7e-61	52.61	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1176330 PE=4 SV=1	[more]
tr\|A0A2C9V5T4\|A0A2C9V5T4_MANES	3.9e-60	54.17	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G061600 PE=4 SV=...	[more]

BLAST of Bhi05G001558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455368.1	3.3e-111	89.91	PREDICTED: protein TIC 20-IV, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_016901684.1	3.3e-111	89.91	PREDICTED: protein TIC 20-IV, chloroplastic isoform X2 [Cucumis melo]	[more]
KGN43568.1	1.6e-110	90.28	hypothetical protein Csa_7G045570 [Cucumis sativus]	[more]
XP_004144571.2	1.6e-110	90.28	PREDICTED: protein TIC 20-IV, chloroplastic [Cucumis sativus]	[more]
XP_022952618.1	3.4e-108	88.53	protein TIC 20-IV, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001558	Bhi05M001558	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 38..203 e-value: 1.6E-63 score: 213.6
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 8..218
None	No IPR available	PANTHER	PTHR33510:SF2	PROTEIN TIC 20-IV, CHLOROPLASTIC	coord: 8..218

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi05G001558	Csa7G045570	Cucumber (Chinese Long) v2	cuwgoB662
Bhi05G001558	MELO3C018778	Melon (DHL92) v3.5.1	mewgoB221
Bhi05G001558	ClCG02G001440	Watermelon (Charleston Gray)	wcgwgoB276
Bhi05G001558	CSPI07G04150	Wild cucumber (PI 183967)	cpiwgoB673
Bhi05G001558	Cucsa.148110	Cucumber (Gy14) v1	cgywgoB288
Bhi05G001558	Lsi11G015010	Bottle gourd (USVL1VR-Ls)	lsiwgoB116
Bhi05G001558	CsGy7G003790	Cucumber (Gy14) v2	cgybwgoB633
Bhi05G001558	MELO3C018778.2	Melon (DHL92) v3.6.1	medwgoB221
Bhi05G001558	CsaV3_7G004010	Cucumber (Chinese Long) v3	cucwgoB687
Bhi05G001558	Cla007712	Watermelon (97103) v1	wgowmB274
Bhi05G001558	Cla97C02G027890	Watermelon (97103) v2	wgowmbB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001558	Wax gourd	wgowgoB071
Bhi05G001558	Cucurbita maxima (Rimu)	cmawgoB0117
Bhi05G001558	Cucurbita maxima (Rimu)	cmawgoB0643
Bhi05G001558	Cucurbita moschata (Rifu)	cmowgoB0109
Bhi05G001558	Cucurbita moschata (Rifu)	cmowgoB0643
Bhi05G001558	Cucurbita pepo (Zucchini)	cpewgoB0318
Bhi05G001558	Cucurbita pepo (Zucchini)	cpewgoB0844
Bhi05G001558	Cucurbita pepo (Zucchini)	cpewgoB0858
Bhi05G001558	Bottle gourd (USVL1VR-Ls)	lsiwgoB063
Bhi05G001558	Silver-seed gourd	carwgoB0847
Bhi05G001558	Silver-seed gourd	carwgoB1021