Bhi04G001544 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001544
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	conserved peptide upstream open reading frame 53
Location	chr4 : 49468672 .. 49469001 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCTTTCATCCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTATTTCGATGCGTTTGAGACCGAAGAGGTTTGTGGGGGGTTTTCTTTTTCTTCTTTTGATTTCCTGTTTTTTCATGGGTTTTGTTCTGACTTTTGTTTTGTGGGTCTTTTGCAGGACTTGTTCTGGAGTGAAGTGCTCTGGAGCTTTTCATATACAACGATTCTCATTCCTTATTTTGCTCTTCAGAAGTGGGGGTTTCACTTGA

mRNA sequence

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCTTTCATCCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTATTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTCTGGAGCTTTTCATATACAACGATTCTCATTCCTTATTTTGCTCTTCAGAAGTGGGGGTTTCACTTGA

Coding sequence (CDS)

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCTTTCATCCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTATTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTCTGGAGCTTTTCATATACAACGATTCTCATTCCTTATTTTGCTCTTCAGAAGTGGGGGTTTCACTTGA

Protein sequence

MSAGFDLAVIGALLQLCFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCSGVKCSGAFHIQRFSFLILLFRSGGFT

Homology

[Close]

BLAST of Bhi04G001544 vs. TAIR10
Match: AT1G68552.1 (conserved peptide upstream open reading frame 53)

HSP 1 Score: 50.1 bits (118), Expect = 7.6e-07
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQL--------CFSSFILSCCMI----LCSFKQSLNLVFSSISMRLR 60
          MSAGF+  VI +L+ +              L  C++     C  KQ L L   S+SMRLR
Sbjct: 1  MSAGFESTVILSLIHISSPISSXXXXXXXXLKSCLLNALHFCCNKQRLVLETPSLSMRLR 60

Query: 61 PKRTCSGVKCSGAFHI--QRFSFLIL 73
          PKRTCS V+  G FHI  Q+FSF I+
Sbjct: 61 PKRTCSSVEVFGGFHIKQQKFSFFIV 86

[Close]

BLAST of Bhi04G001544 vs. TrEMBL
Match: tr|A0A0A0KAV1|A0A0A0KAV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-26
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCSGVKCSG 60
          MSAGFDLAVIGALLQLCFSS +L    IL SFKQSLNL+FSS+SMRLRPKRTCSGVKC G
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLL----ILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFG 60

Query: 61 AFHIQRFSFLILLFRSGGFT 81
          AFHI+RFSFL+LLFR GGFT
Sbjct: 61 AFHIKRFSFLLLLFRKGGFT 76

[Close]

BLAST of Bhi04G001544 vs. TrEMBL
Match: tr|A0A2C9UKK3|A0A2C9UKK3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.1e-15
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCF----SSFILSCC-----MILCSFKQSLNLVFSSISMRLRPKR 60
          MSA FDLA+IGALL+LCF    SS +  CC     M+LC F+QSL+L F +ISMRLR KR
Sbjct: 1  MSACFDLALIGALLKLCFIPSASSTLCVCCGSLCYMLLCCFQQSLHLGFPAISMRLRSKR 60

Query: 61 TCSGVKCSGAFHIQRFSFLILLFR 76
          TCSGV+C G FHI+RF +L L  R
Sbjct: 61 TCSGVECFGGFHIKRFFYLFLYLR 84

[Close]

BLAST of Bhi04G001544 vs. TrEMBL
Match: tr|A0A2P4IN38|A0A2P4IN38_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_38094 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 49/80 (61.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQL---CFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCSGVK 60
           MSA FDL  IGALLQL     ++F   CC  LC  +Q LNLV SS+SMRLR KRTCSGV+
Sbjct: 45  MSAEFDLVSIGALLQLWIFTIATFESVCCFTLCCLRQRLNLVLSSVSMRLRLKRTCSGVE 104

Query: 61  CSGAFHIQRFSFLILLFRSG 78
           C   FHI+RFSFL L  R G
Sbjct: 105 CFAPFHIKRFSFLFLFLRGG 124

[Close]

BLAST of Bhi04G001544 vs. TrEMBL
Match: tr|A0A251R5W6|A0A251R5W6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G310000 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQL------CFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCS 60
           MSA F LAVIGALL+L       FS++++ C M+LC F+Q LN V SS+SM LRPKRTCS
Sbjct: 78  MSASFALAVIGALLKLWILTSSFFSAYLVICFMLLCWFRQRLNPVISSVSMSLRPKRTCS 137

Query: 61  GVKCSGAFHIQRFSFLILLFR 76
           G++  GAFHI+RFSFL L  R
Sbjct: 138 GLQYFGAFHIKRFSFLFLFLR 158

[Close]

BLAST of Bhi04G001544 vs. TrEMBL
Match: tr|A0A0D2RHJ6|A0A0D2RHJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G183400 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSS-------------FILSCCMILCSFKQSLNLVFSSISMRL 60
          MSA FDLA+IGA LQLCFSS              +   CMILC ++Q LN+VFS++SMRL
Sbjct: 1  MSAEFDLALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCSGAFHIQRFSFLILLFRSGGFT 81
          RPK++CSGV+  G FHI++  F + LF  G  T
Sbjct: 61 RPKKSCSGVESFGGFHIKQRFFYLFLFLRGAHT 93

[Close]

BLAST of Bhi04G001544 vs. NCBI nr
Match: KGN45959.1 (hypothetical protein Csa_6G039145 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCSGVKCSG 60
          MSAGFDLAVIGALLQLCFSS +L    IL SFKQSLNL+FSS+SMRLRPKRTCSGVKC G
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLL----ILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFG 60

Query: 61 AFHIQRFSFLILLFRSGGFT 81
          AFHI+RFSFL+LLFR GGFT
Sbjct: 61 AFHIKRFSFLLLLFRKGGFT 76

[Close]

BLAST of Bhi04G001544 vs. NCBI nr
Match: OAY31310.1 (hypothetical protein MANES_14G101800 [Manihot esculenta])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCF----SSFILSCC-----MILCSFKQSLNLVFSSISMRLRPKR 60
          MSA FDLA+IGALL+LCF    SS +  CC     M+LC F+QSL+L F +ISMRLR KR
Sbjct: 1  MSACFDLALIGALLKLCFIPSASSTLCVCCGSLCYMLLCCFQQSLHLGFPAISMRLRSKR 60

Query: 61 TCSGVKCSGAFHIQRFSFLILLFR 76
          TCSGV+C G FHI+RF +L L  R
Sbjct: 61 TCSGVECFGGFHIKRFFYLFLYLR 84

[Close]

BLAST of Bhi04G001544 vs. NCBI nr
Match: PQQ09678.1 (hypothetical protein Pyn_27402 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLC------FSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCS 60
          MSA F LAVIGALL+LC      FS+++  C M+LC F Q LN V SS+SM LRPKRTCS
Sbjct: 1  MSASFALAVIGALLKLCILTSSSFSAYLAICFMLLCWFWQRLNPVISSVSMSLRPKRTCS 60

Query: 61 GVKCSGAFHIQRFSFLILLFR 76
          G++  GAFHI+RFSFL L  R
Sbjct: 61 GLQYFGAFHIKRFSFLFLFLR 81

[Close]

BLAST of Bhi04G001544 vs. NCBI nr
Match: POE69886.1 (hypothetical protein CFP56_38094 [Quercus suber])

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 49/80 (61.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQL---CFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCSGVK 60
           MSA FDL  IGALLQL     ++F   CC  LC  +Q LNLV SS+SMRLR KRTCSGV+
Sbjct: 45  MSAEFDLVSIGALLQLWIFTIATFESVCCFTLCCLRQRLNLVLSSVSMRLRLKRTCSGVE 104

Query: 61  CSGAFHIQRFSFLILLFRSG 78
           C   FHI+RFSFL L  R G
Sbjct: 105 CFAPFHIKRFSFLFLFLRGG 124

[Close]

BLAST of Bhi04G001544 vs. NCBI nr
Match: ONI31396.1 (hypothetical protein PRUPE_1G310000, partial [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQL------CFSSFILSCCMILCSFKQSLNLVFSSISMRLRPKRTCS 60
           MSA F LAVIGALL+L       FS++++ C M+LC F+Q LN V SS+SM LRPKRTCS
Sbjct: 78  MSASFALAVIGALLKLWILTSSFFSAYLVICFMLLCWFRQRLNPVISSVSMSLRPKRTCS 137

Query: 61  GVKCSGAFHIQRFSFLILLFR 76
           G++  GAFHI+RFSFL L  R
Sbjct: 138 GLQYFGAFHIKRFSFLFLFLR 158

The following BLAST results are available for this feature:

BLAST of Bhi04G001544 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G001544 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68552.1	7.6e-07	43.02	conserved peptide upstream open reading frame 53	[more]

BLAST of Bhi04G001544 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAV1\|A0A0A0KAV1_CUCSA	4.0e-26	83.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1	[more]
tr\|A0A2C9UKK3\|A0A2C9UKK3_MANES	9.1e-15	60.71	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=...	[more]
tr\|A0A2P4IN38\|A0A2P4IN38_QUESU	1.6e-14	61.25	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_38094 PE=4 SV=1	[more]
tr\|A0A251R5W6\|A0A251R5W6_PRUPE	2.7e-14	60.49	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G310000 P...	[more]
tr\|A0A0D2RHJ6\|A0A0D2RHJ6_GOSRA	4.5e-14	51.61	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G183400 PE=4 ...	[more]

BLAST of Bhi04G001544 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45959.1	6.0e-26	83.75	hypothetical protein Csa_6G039145 [Cucumis sativus]	[more]
OAY31310.1	1.4e-14	60.71	hypothetical protein MANES_14G101800 [Manihot esculenta]	[more]
PQQ09678.1	1.4e-14	61.73	hypothetical protein Pyn_27402 [Prunus yedoensis var. nudiflora]	[more]
POE69886.1	2.4e-14	61.25	hypothetical protein CFP56_38094 [Quercus suber]	[more]
ONI31396.1	4.0e-14	60.49	hypothetical protein PRUPE_1G310000, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001544	Bhi04M001544	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G001544	CmaCh15G009030	Cucurbita maxima (Rimu)	cmawgoB0401
Bhi04G001544	CmoCh15G009400	Cucurbita moschata (Rifu)	cmowgoB0396
Bhi04G001544	Lsi08G004050	Bottle gourd (USVL1VR-Ls)	lsiwgoB597
Bhi04G001544	Cp4.1LG13g06690	Cucurbita pepo (Zucchini)	cpewgoB0251
Bhi04G001544	CsaV3_6G003500	Cucumber (Chinese Long) v3	cucwgoB595
Bhi04G001544	Cla97C08G148160	Watermelon (97103) v2	wgowmbB317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001544	Cucumber (Gy14) v1	cgywgoB736
Bhi04G001544	Cucumber (Gy14) v2	cgybwgoB549
Bhi04G001544	Cucurbita maxima (Rimu)	cmawgoB0391
Bhi04G001544	Cucurbita maxima (Rimu)	cmawgoB0869
Bhi04G001544	Cucurbita moschata (Rifu)	cmowgoB0386
Bhi04G001544	Cucurbita moschata (Rifu)	cmowgoB0865
Bhi04G001544	Cucurbita moschata (Rifu)	cmowgoB0871
Bhi04G001544	Cucurbita pepo (Zucchini)	cpewgoB0252
Bhi04G001544	Wild cucumber (PI 183967)	cpiwgoB581
Bhi04G001544	Cucumber (Chinese Long) v2	cuwgoB578
Bhi04G001544	Melon (DHL92) v3.6.1	medwgoB347
Bhi04G001544	Melon (DHL92) v3.5.1	mewgoB348
Bhi04G001544	Watermelon (Charleston Gray)	wcgwgoB616
Bhi04G001544	Watermelon (97103) v1	wgowmB304
Bhi04G001544	Silver-seed gourd	carwgoB0538
Bhi04G001544	Silver-seed gourd	carwgoB0967