CsaV3_6G003500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G003500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	conserved peptide upstream open reading frame 53
Location	chr6 : 2800747 .. 2801075 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTATTGCAGCTCTGTTTTTCATCTTTACTTCTCATTCTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGTTTGTTGGGATTTTTCTTCTTTTCATTTTCTTTTCTTTTCATTTTTCTGGGTTTTAATCTGATTCTTTTTATTTTGTTTTCTGGGTGGTTTTTGCAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTATTGCTCTTTAGAAAAGGGGGTTTCACTTAG

mRNA sequence

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTATTGCAGCTCTGTTTTTCATCTTTACTTCTCATTCTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTATTGCTCTTTAGAAAAGGGGGTTTCACTTAG

Coding sequence (CDS)

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTATTGCAGCTCTGTTTTTCATCTTTACTTCTCATTCTCGGCTCTTTCAAGCAGAGCCTCAATCTGCTGTTTTCATCTGTTTCGATGCGTTTGAGGCCGAAGAGGACTTGTTCTGGAGTCAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTATTGCTCTTTAGAAAAGGGGGTTTCACTTAG

Protein sequence

MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRKGGFT

Homology

[Close]

BLAST of CsaV3_6G003500 vs. NCBI nr
Match: KGN45959.1 (hypothetical protein Csa_6G039145 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-32
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
          MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60

Query: 61 KRFSFLLLLFRKGGFT 77
          KRFSFLLLLFRKGGFT
Sbjct: 61 KRFSFLLLLFRKGGFT 76

[Close]

BLAST of CsaV3_6G003500 vs. NCBI nr
Match: KJB79990.1 (hypothetical protein B456_013G076200 [Gossypium raimondii])

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 49/87 (56.32%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSS-----------LLLILGSFKQSLNLLFSSVSMRLRPKRTC 60
          MS  FDLA+IGA LQLCFSS             L L  ++Q LNL+   VSMRLRPK+TC
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTIFCSHLFIKASLALCFYRQRLNLVLPIVSMRLRPKKTC 60

Query: 61 SGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          SGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 SGVGCFGGFHIKQRFFYLLLFLRGAYT 87

[Close]

BLAST of CsaV3_6G003500 vs. NCBI nr
Match: OAY31310.1 (hypothetical protein MANES_14G101800 [Manihot esculenta])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCF-----SSLLLILGS--------FKQSLNLLFSSVSMRLRPKR 60
          MSA FDLA+IGALL+LCF     S+L +  GS        F+QSL+L F ++SMRLR KR
Sbjct: 1  MSACFDLALIGALLKLCFIPSASSTLCVCCGSLCYMLLCCFQQSLHLGFPAISMRLRSKR 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV+CFG FHIKRF F L L+ +G  T
Sbjct: 61 TCSGVECFGGFHIKRF-FYLFLYLRGALT 88

[Close]

BLAST of CsaV3_6G003500 vs. NCBI nr
Match: EXB97054.1 (hypothetical protein L484_014666 [Morus notabilis])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
           MSAGFDLA+IGA  +L   +      SF + LNL+ +SVSMRLRPKRTCSGV+CFG FHI
Sbjct: 81  MSAGFDLALIGAPSKLWLFTSASSSCSFVKRLNLVKNSVSMRLRPKRTCSGVECFGTFHI 140

Query: 61  KRFSFLLLLFRKGGFT 77
           KRFS ++ LF +GG T
Sbjct: 141 KRFS-VIFLFLRGGLT 155

[Close]

BLAST of CsaV3_6G003500 vs. NCBI nr
Match: KJB50713.1 (hypothetical protein B456_008G183400 [Gossypium raimondii])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSS-----------------LLLILGSFKQSLNLLFSSVSMRL 60
          MSA FDLA+IGA LQLCFSS                   +IL  ++Q LN++FS+VSMRL
Sbjct: 1  MSAEFDLALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          RPK++CSGV+ FG FHIK+  F L LF +G  T
Sbjct: 61 RPKKSCSGVESFGGFHIKQRFFYLFLFLRGAHT 93

[Close]

BLAST of CsaV3_6G003500 vs. TAIR10
Match: AT1G68552.1 (conserved peptide upstream open reading frame 53)

HSP 1 Score: 47.8 bits (112), Expect = 3.6e-06
Identity = 38/86 (44.19%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQL-------------CFSSLLLILGSF---KQSLNLLFSSVSMRLR 60
          MSAGF+  VI +L+ +                S LL    F   KQ L L   S+SMRLR
Sbjct: 1  MSAGFESTVILSLIHISSPISSXXXXXXXXLKSCLLNALHFCCNKQRLVLETPSLSMRLR 60

Query: 61 PKRTCSGVKCFGAFHIK--RFSFLLL 69
          PKRTCS V+ FG FHIK  +FSF ++
Sbjct: 61 PKRTCSSVEVFGGFHIKQQKFSFFIV 86

[Close]

BLAST of CsaV3_6G003500 vs. TrEMBL
Match: tr|A0A0A0KAV1|A0A0A0KAV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-32
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
          MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60

Query: 61 KRFSFLLLLFRKGGFT 77
          KRFSFLLLLFRKGGFT
Sbjct: 61 KRFSFLLLLFRKGGFT 76

[Close]

BLAST of CsaV3_6G003500 vs. TrEMBL
Match: tr|A0A0D2W3V4|A0A0D2W3V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G076200 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 49/87 (56.32%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSS-----------LLLILGSFKQSLNLLFSSVSMRLRPKRTC 60
          MS  FDLA+IGA LQLCFSS             L L  ++Q LNL+   VSMRLRPK+TC
Sbjct: 1  MSTEFDLALIGARLQLCFSSSTIFCSHLFIKASLALCFYRQRLNLVLPIVSMRLRPKKTC 60

Query: 61 SGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          SGV CFG FHIK+  F LLLF +G +T
Sbjct: 61 SGVGCFGGFHIKQRFFYLLLFLRGAYT 87

[Close]

BLAST of CsaV3_6G003500 vs. TrEMBL
Match: tr|W9RM35|W9RM35_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014666 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MSAGFDLAVIGALLQLCFSSLLLILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFGAFHI 60
           MSAGFDLA+IGA  +L   +      SF + LNL+ +SVSMRLRPKRTCSGV+CFG FHI
Sbjct: 81  MSAGFDLALIGAPSKLWLFTSASSSCSFVKRLNLVKNSVSMRLRPKRTCSGVECFGTFHI 140

Query: 61  KRFSFLLLLFRKGGFT 77
           KRFS ++ LF +GG T
Sbjct: 141 KRFS-VIFLFLRGGLT 155

[Close]

BLAST of CsaV3_6G003500 vs. TrEMBL
Match: tr|A0A2C9UKK3|A0A2C9UKK3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-13
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCF-----SSLLLILGS--------FKQSLNLLFSSVSMRLRPKR 60
          MSA FDLA+IGALL+LCF     S+L +  GS        F+QSL+L F ++SMRLR KR
Sbjct: 1  MSACFDLALIGALLKLCFIPSASSTLCVCCGSLCYMLLCCFQQSLHLGFPAISMRLRSKR 60

Query: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          TCSGV+CFG FHIKRF F L L+ +G  T
Sbjct: 61 TCSGVECFGGFHIKRF-FYLFLYLRGALT 88

[Close]

BLAST of CsaV3_6G003500 vs. TrEMBL
Match: tr|A0A0D2RHJ6|A0A0D2RHJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G183400 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-13
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 1  MSAGFDLAVIGALLQLCFSS-----------------LLLILGSFKQSLNLLFSSVSMRL 60
          MSA FDLA+IGA LQLCFSS                   +IL  ++Q LN++FS+VSMRL
Sbjct: 1  MSAEFDLALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRKGGFT 77
          RPK++CSGV+ FG FHIK+  F L LF +G  T
Sbjct: 61 RPKKSCSGVESFGGFHIKQRFFYLFLFLRGAHT 93

The following BLAST results are available for this feature:

BLAST of CsaV3_6G003500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45959.1	4.1e-32	100.00	hypothetical protein Csa_6G039145 [Cucumis sativus]	[more]
KJB79990.1	2.5e-13	56.32	hypothetical protein B456_013G076200 [Gossypium raimondii]	[more]
OAY31310.1	5.6e-13	57.30	hypothetical protein MANES_14G101800 [Manihot esculenta]	[more]
EXB97054.1	5.6e-13	61.84	hypothetical protein L484_014666 [Morus notabilis]	[more]
KJB50713.1	1.2e-12	51.61	hypothetical protein B456_008G183400 [Gossypium raimondii]	[more]

BLAST of CsaV3_6G003500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68552.1	3.6e-06	44.19	conserved peptide upstream open reading frame 53	[more]

BLAST of CsaV3_6G003500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G003500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAV1\|A0A0A0KAV1_CUCSA	2.7e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1	[more]
tr\|A0A0D2W3V4\|A0A0D2W3V4_GOSRA	1.7e-13	56.32	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G076200 PE=4 ...	[more]
tr\|W9RM35\|W9RM35_9ROSA	3.7e-13	61.84	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014666 PE=4 SV=1	[more]
tr\|A0A2C9UKK3\|A0A2C9UKK3_MANES	3.7e-13	57.30	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=...	[more]
tr\|A0A0D2RHJ6\|A0A0D2RHJ6_GOSRA	8.2e-13	51.61	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G183400 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G003500.1	CsaV3_6G003500.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G003500	CmaCh15G009030	Cucurbita maxima (Rimu)	cmacucB0367
CsaV3_6G003500	CmoCh15G009400	Cucurbita moschata (Rifu)	cmocucB0364
CsaV3_6G003500	Cp4.1LG13g06690	Cucurbita pepo (Zucchini)	cpecucB0234
CsaV3_6G003500	Lsi08G004050	Bottle gourd (USVL1VR-Ls)	cuclsiB502
CsaV3_6G003500	Cla97C08G148160	Watermelon (97103) v2	cucwmbB509
CsaV3_6G003500	Bhi04G001544	Wax gourd	cucwgoB595

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G003500	Cucumber (Chinese Long) v3	cuccucB201
CsaV3_6G003500	Cucumber (Gy14) v2	cgybcucB241
CsaV3_6G003500	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G003500	Cucumber (Gy14) v1	cgycucB445
CsaV3_6G003500	Cucumber (Gy14) v1	cgycucB556
CsaV3_6G003500	Cucurbita maxima (Rimu)	cmacucB0911
CsaV3_6G003500	Cucurbita moschata (Rifu)	cmocucB0904
CsaV3_6G003500	Cucurbita pepo (Zucchini)	cpecucB0575
CsaV3_6G003500	Wild cucumber (PI 183967)	cpicucB306
CsaV3_6G003500	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G003500	Melon (DHL92) v3.5.1	cucmeB428
CsaV3_6G003500	Melon (DHL92) v3.5.1	cucmeB486
CsaV3_6G003500	Melon (DHL92) v3.6.1	cucmedB418
CsaV3_6G003500	Melon (DHL92) v3.6.1	cucmedB473
CsaV3_6G003500	Watermelon (Charleston Gray)	cucwcgB495
CsaV3_6G003500	Watermelon (Charleston Gray)	cucwcgB517
CsaV3_6G003500	Watermelon (97103) v1	cucwmB484
CsaV3_6G003500	Watermelon (97103) v1	cucwmB525
CsaV3_6G003500	Watermelon (97103) v2	cucwmbB486
CsaV3_6G003500	Wax gourd	cucwgoB664