Bhi01G000005 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000005
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 146607 .. 146861 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCTTTTCGTAATGCTTTTGTTGGTCGCCGTTGCGGTGGCGCGTAGTGTTCCGAGTGGTGATCGGGTGGAGTTTGTGGACGCAGTTGAAGTGAAGGCGGAGGAGATGCCGAAGGATGGTGGCCGTGGTGATGCTGTTCATGACCAGAAGAATTTTGTCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTATCCTTAAAATTAGACTACCCCTATTTTCATACATCTCTTCTATCATAA

mRNA sequence

ATGGAGAAGCTTTTCGTAATGCTTTTGTTGGTCGCCGTTGCGGTGGCGCGTAGTGTTCCGAGTGGTGATCGGGTGGAGTTTGTGGACGCAGTTGAAGTGAAGGCGGAGGAGATGCCGAAGGATGGTGGCCGTGGTGATGCTGTTCATGACCAGAAGAATTTTGTCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTATCCTTAAAATTAGACTACCCCTATTTTCATACATCTCTTCTATCATAA

Coding sequence (CDS)

ATGGAGAAGCTTTTCGTAATGCTTTTGTTGGTCGCCGTTGCGGTGGCGCGTAGTGTTCCGAGTGGTGATCGGGTGGAGTTTGTGGACGCAGTTGAAGTGAAGGCGGAGGAGATGCCGAAGGATGGTGGCCGTGGTGATGCTGTTCATGACCAGAAGAATTTTGTCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTACGTATCCTTAAAATTAGACTACCCCTATTTTCATACATCTCTTCTATCATAA

Protein sequence

MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIGGFAGMGGYVSLKLDYPYFHTSLLS

Homology

[Close]

BLAST of Bhi01G000005 vs. TrEMBL
Match: tr|A0A0A0L460|A0A0A0L460_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.7e-16
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFVM LLVAVA AR VP GD+ EFV+AVEVKA E+P++ GRGDAV D+KNF+YGG+G
Sbjct: 1  MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

[Close]

BLAST of Bhi01G000005 vs. TrEMBL
Match: tr|A0A1S3AYL0|A0A1S3AYL0_CUCME (uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC103484176 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFV+ LLVA+A AR VP GD+ EFV+AVEVKA E+P++ GRGD V D+KNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Bhi01G000005 vs. NCBI nr
Match: XP_011652752.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFVM LLVAVA AR VP GD+ EFV+AVEVKA E+P++ GRGDAV D+KNF+YGG+G
Sbjct: 1  MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Bhi01G000005 vs. NCBI nr
Match: KGN56770.1 (hypothetical protein Csa_3G133210 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFVM LLVAVA AR VP GD+ EFV+AVEVKA E+P++ GRGDAV D+KNF+YGG+G
Sbjct: 1  MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

[Close]

BLAST of Bhi01G000005 vs. NCBI nr
Match: XP_008439361.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 8.5e-15
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFV+ LLVA+A AR VP GD+ EFV+AVEVKA E+P++ GRGD V D+KNF+YGG+G
Sbjct: 1  MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of Bhi01G000005 vs. NCBI nr
Match: XP_022146906.1 (glycine-rich cell wall structural protein [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVA----VARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVY 60
          M KL VMLLL AVA     AR VP G ++E VDAVEVKA E+P D   GDAV DQKNF+Y
Sbjct: 3  MFKLCVMLLLAAVAAVATAARQVPGGGQMELVDAVEVKAAELPAD--IGDAVRDQKNFLY 62

Query: 61 GGIGGFAGMG 67
          GG+GGFAGMG
Sbjct: 63 GGVGGFAGMG 70

[Close]

BLAST of Bhi01G000005 vs. NCBI nr
Match: XP_022974868.1 (glycine-rich cell wall structural protein [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MEKLFVMLLLVAVAVARSVPSGDRVEFVDAVEVKAEEMPKDGGRGDAVHDQKNFVYGGIG 60
          MEKLFVML L  VA AR+VP  ++V+FVDAVEVKA E+P  G  G AV D+KNF+YGG+G
Sbjct: 1  MEKLFVMLFLAVVAAARNVPGAEQVQFVDAVEVKAAELPTAG--GGAVRDEKNFIYGGVG 59

Query: 61 G 62
          G
Sbjct: 61 G 59

The following BLAST results are available for this feature:

BLAST of Bhi01G000005 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000005 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000005 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L460\|A0A0A0L460_CUCSA	8.7e-16	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1	[more]
tr\|A0A1S3AYL0\|A0A1S3AYL0_CUCME	5.6e-15	68.85	uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Bhi01G000005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652752.1	4.5e-16	73.77	PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus]	[more]
KGN56770.1	1.3e-15	73.33	hypothetical protein Csa_3G133210 [Cucumis sativus]	[more]
XP_008439361.1	8.5e-15	68.85	PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS46 [Cucumis melo]	[more]
XP_022146906.1	5.2e-12	67.14	glycine-rich cell wall structural protein [Momordica charantia]	[more]
XP_022974868.1	3.3e-11	65.57	glycine-rich cell wall structural protein [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000005	Bhi01M000005	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	FAMILY NOT NAMED	coord: 6..70
None	No IPR available	PANTHER	PTHR34463:SF2	SUBFAMILY NOT NAMED	coord: 6..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G000005	Lsi05G018090	Bottle gourd (USVL1VR-Ls)	lsiwgoB452
Bhi01G000005	Carg06270	Silver-seed gourd	carwgoB1122
Bhi01G000005	Cla021448	Watermelon (97103) v1	wgowmB208
Bhi01G000005	Cla97C05G084270	Watermelon (97103) v2	wgowmbB185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000005	Cucumber (Gy14) v1	cgywgoB527
Bhi01G000005	Cucumber (Gy14) v2	cgybwgoB267
Bhi01G000005	Cucurbita maxima (Rimu)	cmawgoB0342
Bhi01G000005	Cucurbita maxima (Rimu)	cmawgoB1015
Bhi01G000005	Cucurbita moschata (Rifu)	cmowgoB0331
Bhi01G000005	Cucurbita moschata (Rifu)	cmowgoB1012
Bhi01G000005	Cucurbita pepo (Zucchini)	cpewgoB0798
Bhi01G000005	Cucurbita pepo (Zucchini)	cpewgoB1116
Bhi01G000005	Wild cucumber (PI 183967)	cpiwgoB278
Bhi01G000005	Cucumber (Chinese Long) v3	cucwgoB282
Bhi01G000005	Cucumber (Chinese Long) v2	cuwgoB278
Bhi01G000005	Melon (DHL92) v3.6.1	medwgoB539
Bhi01G000005	Melon (DHL92) v3.5.1	mewgoB537
Bhi01G000005	Watermelon (Charleston Gray)	wcgwgoB434
Bhi01G000005	Silver-seed gourd	carwgoB0295