Carg06270 (gene) Silver-seed gourd

Overview
NameCarg06270
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_016 : 612407 .. 613153 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTACGTGTAAAACTATTATTAAATTAAAAAATATATATATTTAGTTTGATAATTATTTTATTTTAATTTTTATCTAATTTTGAAAATTAAATTCTTTTAATTTTTAAAATTTTGAAATCCATAATTGAACAGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

mRNA sequence

ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

Coding sequence (CDS)

ATGGAGAAGCTCTTTGTAATGCTCTTCCTGGCTGTTGTTGCGGCGGCTACGGCGGCGCGTAATGTTCCCGGTGGTGAGAAGGTGCAGTTCGTGGACGCCGTTGAAGTCAAGGCGGCGGAGTTGCCGGCGGCGGGTGGTGATGCTGGTCGTGATGAGAAGACTTTTATCTACGGCGGAGTTGGTGGATTTGCTGGCATGGGCGGGTATGCAGGGTTGGGTATGCCGATGCTGGGTGGGTCTGCTGGGATTGGAAAATTTGGTGGAATTGGAGGTTTCGCCGGAATTGGTGACCCGGGTGGCCTCGGCGGTATGGGCGGCGGAGGAGGAGGTGGTGGTGGAATAGGTGGTGTGGCTGGGCATGGAGGTGGCGGAATAGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGAATAGGTGGTATAGTTGGGCATGGACTTGGCGGAGGTGGCGGAATTGGTGGTATACCTGGACATGGACTTGGAGGAGCTGGTGGGGTCGGAGGATCCGGCGGCGGTGACAGTGGAAATGGTGGAACTGGCGGGATCGGAGGATCAGGCGGTGGTGGAGACGGCGGAGCAGGCGTCGTTACCGGTGGCTCTGTTCGACCATAA

Protein sequence

MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGVGGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGIGGVAGHGGGGIGGLAGHGLGGAGGIGGIVGHGLGGGGGIGGIPGHGLGGAGGVGGSGGGDSGNGGTGGIGGSGGGGDGGAGVVTGGSVRP
Homology
[Close]
BLAST of Carg06270 vs. NCBI nr
Match: XP_022945139.1 (glycine-rich protein 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
          MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1  MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]
BLAST of Carg06270 vs. NCBI nr
Match: XP_022945148.1 (glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
          MEKLFVMLFLAVVAAATAARNVPG EKVQFVDAV+VKAAEL AAGGDAGRDEKTFIYGGV
Sbjct: 1  MEKLFVMLFLAVVAAATAARNVPGAEKVQFVDAVQVKAAELLAAGGDAGRDEKTFIYGGV 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]
BLAST of Carg06270 vs. NCBI nr
Match: XP_023540607.1 (glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
          MEKLF MLFLAVVA   AARNVPG E+ QFVDAVEVKAAELP AGGDAGRDEKTFIYGGV
Sbjct: 1  MEKLFAMLFLAVVA---AARNVPGAEQGQFVDAVEVKAAELPTAGGDAGRDEKTFIYGGV 59

Query: 61 GG 63
          GG
Sbjct: 61 GG 59

[Close]
BLAST of Carg06270 vs. NCBI nr
Match: XP_022974868.1 (glycine-rich cell wall structural protein [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-16
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGGV 60
          MEKLFVMLFLAVVA   AARNVPG E+VQFVDAVEVKAAELP AGG A RDEK FIYGGV
Sbjct: 1  MEKLFVMLFLAVVA---AARNVPGAEQVQFVDAVEVKAAELPTAGGGAVRDEKNFIYGGV 59

Query: 61 GG 63
          GG
Sbjct: 61 GG 59

[Close]
BLAST of Carg06270 vs. NCBI nr
Match: XP_022146906.1 (glycine-rich cell wall structural protein [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAA-ATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAGRDEKTFIYGG 60
          M KL VML LA VAA ATAAR VPGG +++ VDAVEVKAAELPA  GDA RD+K F+YGG
Sbjct: 3  MFKLCVMLLLAAVAAVATAARQVPGGGQMELVDAVEVKAAELPADIGDAVRDQKNFLYGG 62

Query: 61 VGG 63
          VGG
Sbjct: 63 VGG 65

[Close]
BLAST of Carg06270 vs. TrEMBL
Match: tr|A0A0A0L460|A0A0A0L460_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELP--AAGGDAGRDEKTFIYG 60
          MEKLFVM  L  VA   AAR VPGG++ +FV+AVEVKAAELP  A  GDA RDEK FIYG
Sbjct: 1  MEKLFVMFLLVAVA---AARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYG 60

Query: 61 GVG 62
          GVG
Sbjct: 61 GVG 60

[Close]
BLAST of Carg06270 vs. TrEMBL
Match: tr|A0A1S3AYL0|A0A1S3AYL0_CUCME (uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC103484176 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 1  MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELP--AAGGDAGRDEKTFIYG 60
          MEKLFV+  L  +A   AAR VPGG++ +FV+AVEVKA ELP  A  GD  RDEK FIYG
Sbjct: 1  MEKLFVLFLLVAIA---AARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYG 60

Query: 61 GVGG 63
          GVGG
Sbjct: 61 GVGG 61

The following BLAST results are available for this feature:
BLAST of Carg06270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945139.13.9e-2195.16glycine-rich protein 5 isoform X1 [Cucurbita moschata][more]
XP_022945148.13.9e-2195.16glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita moschata][more]
XP_023540607.12.0e-1787.10glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo][more]
XP_022974868.12.9e-1685.48glycine-rich cell wall structural protein [Cucurbita maxima][more]
XP_022146906.11.6e-1173.02glycine-rich cell wall structural protein [Momordica charantia][more]
BLAST of Carg06270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L460|A0A0A0L460_CUCSA1.6e-1069.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133210 PE=4 SV=1[more]
tr|A0A1S3AYL0|A0A1S3AYL0_CUCME1.7e-0964.06uncharacterized PE-PGRS family protein PE_PGRS46 OS=Cucumis melo OX=3656 GN=LOC1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06270-RACarg06270-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 145..155
score: 39.77
coord: 119..134
score: 49.22
coord: 2..18
score: 29.41
coord: 171..189
score: 42.11
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..204
NoneNo IPR availablePANTHERPTHR34463:SF2SUBFAMILY NOT NAMEDcoord: 4..130
NoneNo IPR availablePANTHERPTHR34463FAMILY NOT NAMEDcoord: 4..130

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06270Cla021448Watermelon (97103) v1carwmB0961
Carg06270CmaCh06G012670Cucurbita maxima (Rimu)carcmaB1325
Carg06270CmoCh06G012760Cucurbita moschata (Rifu)carcmoB1288
Carg06270Cla97C05G084270Watermelon (97103) v2carwmbB1008
Carg06270Bhi01G000005Wax gourdcarwgoB1122
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06270Silver-seed gourdcarcarB274
Carg06270Silver-seed gourdcarcarB266
Carg06270Cucumber (Gy14) v1carcgyB1077
Carg06270Silver-seed gourdcarcarB610
Carg06270Silver-seed gourdcarcarB649
Carg06270Cucumber (Gy14) v2carcgybB0945
Carg06270Cucumber (Gy14) v2carcgybB0947
Carg06270Cucumber (Gy14) v2carcgybB0948
Carg06270Cucurbita maxima (Rimu)carcmaB1320
Carg06270Cucurbita maxima (Rimu)carcmaB1321
Carg06270Cucurbita maxima (Rimu)carcmaB1322
Carg06270Cucurbita maxima (Rimu)carcmaB1323
Carg06270Cucurbita maxima (Rimu)carcmaB1327
Carg06270Cucurbita moschata (Rifu)carcmoB1284
Carg06270Cucurbita moschata (Rifu)carcmoB1285
Carg06270Cucurbita moschata (Rifu)carcmoB1287
Carg06270Cucurbita moschata (Rifu)carcmoB1289
Carg06270Cucurbita pepo (Zucchini)carcpeB1328
Carg06270Cucurbita pepo (Zucchini)carcpeB1329
Carg06270Cucurbita pepo (Zucchini)carcpeB1330
Carg06270Cucurbita pepo (Zucchini)carcpeB1331
Carg06270Cucurbita pepo (Zucchini)carcpeB1332
Carg06270Cucurbita pepo (Zucchini)carcpeB1333
Carg06270Wild cucumber (PI 183967)carcpiB0997
Carg06270Wild cucumber (PI 183967)carcpiB0998
Carg06270Wild cucumber (PI 183967)carcpiB0995
Carg06270Cucumber (Chinese Long) v2carcuB0974
Carg06270Cucumber (Chinese Long) v2carcuB0975
Carg06270Cucumber (Chinese Long) v3carcucB1001
Carg06270Cucumber (Chinese Long) v3carcucB1002
Carg06270Cucumber (Chinese Long) v3carcucB1003
Carg06270Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06270Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06270Bottle gourd (USVL1VR-Ls)carlsiB879
Carg06270Melon (DHL92) v3.5.1carmeB0939
Carg06270Melon (DHL92) v3.5.1carmeB0941
Carg06270Melon (DHL92) v3.6.1carmedB0945
Carg06270Melon (DHL92) v3.6.1carmedB0947
Carg06270Watermelon (Charleston Gray)carwcgB0935
Carg06270Watermelon (Charleston Gray)carwcgB0936
Carg06270Watermelon (Charleston Gray)carwcgB0938
Carg06270Watermelon (97103) v1carwmB0962
Carg06270Watermelon (97103) v2carwmbB1009
Carg06270Watermelon (97103) v2carwmbB1011
Carg06270Wax gourdcarwgoB1114
Carg06270Wax gourdcarwgoB1123