Lsi05G018090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G018090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 25342336 .. 25344198 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGCAATTGCGGCGGCGCGTAGCGTTCCGCGCGGTGATCAGGTGGAGTTCGTGGACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGACTGGTGGTGCTGTTCGTGACGAGAAGAATTTTATCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGGTAATTACCCTTAAAACTACTTTTAACCATTTACAGAGACTTTTTTTTACTATATAATATTTAGGTGCATGCATTTTGGGTAATATATATTTTTGTGCATCCCATCAAAAATTTCAATCATAATTAATTTTATTACATTTTTTTAAAAAATATGTTAATTCAATTTGTATGGTGTAATTAAGGTGAAGATGCACCCAAATATTACTCTTTTAACCACTCCACTGTTTTTTAGCAATGTCCATCTCATTTACACAAAATAATAAAGGGTCTTTTCACAAATAGAAAAAAAAAAAAAACTAATTACACGTATAGAAAAAAAGTGAGAAATATAAAAGTATGTGGTGCACTTTTTTATATATATGTAATTAGTTTTTTTTTTTCTATATACAACAATTTCTCAAATAATAATAATAAAATATTTTAAAAAATATTGACACGTGGCAATATTTTATTAGACGAATGTATGGGATGAACAAAGATAAGTGTAGTCCAGACAACACCTAAATTTCTTTTCTTCTTCTGATGAGTACCTGAAGTAGTAGACTGGTGAAAAGATATTCGTAATTGAAAATATACTTCTTTAAAAAAATGAGGAATACTACACAGCACTAATATAATTTTTATGCACAACTTTAGTCGGAAATAGAGTAAGAATAAAATAAAAAAATATTTTTTAAAAAAACAAGTCATTTTGTGATGGTACACTTGAATCCACCTCATTTTTTTAAAAGTACTTTTAGGTTCTTTCAAGTGCTGGTCAAATCTTTATAAATACTTCATTATATATATATTTAAGATCCTGCGTTATTGTTATTGGTTCTCCGTTCTAGGATGCTGTCATATGATTTTTATGTTTCTGATTCTAACTTGAACTCAAGGGTAACTTTTGAAATATTTATGAAATGTTATGCATAATATTACAATGCTTTGAAACGATCTAAATATTTTTAAACAAACACCAAGGTTGAGGTATATTTTATAATTCAGCCTAAAAATAAACTAGGTTTAATTCTTTGCCATTTCTTTAACGTGTTTTTCACTTTTTATAAAGCATGCACTTGAATTTTAAGCTAAAAACAAGCTTTCTAAAAACCCTTTTGCTTGTAGTTATTTCTTTAAAAAAAAAAAAAAAAAAAAAAACTTAAAATTTGAAAATGGTTTTTCAAAAACGTTAAACAAAGCAGACACTCAGGGATGGGGGGGTTGCCGCAATTAGTTTATAAGTTTGTTTTTTTTCTAAAAATATAGAAAATAAAAAGTAAAAATAATTATTTTCTTTGGGAGACTAAATTAATGGTGGACAATTAAATTTAATATCTTATTCATGTGGTTTAACAGATACGCAGGGATGGGAGGGTTGCCGATGCTGGGGGGCGCCGCTGGGATCGGAAAATTTGGTGGAATTGGTGGGGTTGCTGGAATTGGTAGCTTGGGTGGCCCCGGCGGTCTGGGCGGCGGAGGAGCTGGTGGTGGCGGCGGTTTGGGTGGCGGAGGAGCTAACGGAATCGGCGGTTTAGCTGGGCATGGACTTGGCGGAGCTGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGTGTTGGAGGTGGCAGTGGCGTCGGGGGATCCAGCGGCGGTGTCGGAGGAGATGGTGGAGCTGGCGGAGGTCCGGTCAGTGGTGCAGTTCCCCCATAA

mRNA sequence

ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGCAATTGCGGCGGCGCGTAGCGTTCCGCGCGGTGATCAGGTGGAGTTCGTGGACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGACTGGTGGTGCTGTTCGTGACGAGAAGAATTTTATCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGATACGCAGGGATGGGAGGGTTGCCGATGCTGGGGGGCGCCGCTGGGATCGGAAAATTTGGTGGAATTGGTGGGGTTGCTGGAATTGGTAGCTTGGGTGGCCCCGGCGGTCTGGGCGGCGGAGGAGCTGGTGGTGGCGGCGGTTTGGGTGGCGGAGGAGCTAACGGAATCGGCGGTTTAGCTGGGCATGGACTTGGCGGAGCTGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGTGTTGGAGGTGGCAGTGGCGTCGGGGGATCCAGCGGCGGTGTCGGAGGAGATGGTGGAGCTGGCGGAGGTCCGGTCAGTGGTGCAGTTCCCCCATAA

Coding sequence (CDS)

ATGGAGAAGCTTTTTGTAATGCTTTTGTTGGTCGCAATTGCGGCGGCGCGTAGCGTTCCGCGCGGTGATCAGGTGGAGTTCGTGGACGCGGTTGAAGTGAAGGCGGCGGAGCTGCCGACTGGTGGTGCTGTTCGTGACGAGAAGAATTTTATCTACGGCGGAATTGGCGGCTTTGCTGGCATGGGCGGATACGCAGGGATGGGAGGGTTGCCGATGCTGGGGGGCGCCGCTGGGATCGGAAAATTTGGTGGAATTGGTGGGGTTGCTGGAATTGGTAGCTTGGGTGGCCCCGGCGGTCTGGGCGGCGGAGGAGCTGGTGGTGGCGGCGGTTTGGGTGGCGGAGGAGCTAACGGAATCGGCGGTTTAGCTGGGCATGGACTTGGCGGAGCTGGTGGTCTAGCTGGGCATGGACTTGGTGGAGCTGGCGGTGTTGGAGGTGGCAGTGGCGTCGGGGGATCCAGCGGCGGTGTCGGAGGAGATGGTGGAGCTGGCGGAGGTCCGGTCAGTGGTGCAGTTCCCCCATAA

Protein sequence

MEKLFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPTGGAVRDEKNFIYGGIGGFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGGGGANGIGGLAGHGLGGAGGLAGHGLGGAGGVGGGSGVGGSSGGVGGDGGAGGGPVSGAVPP

Homology

[Close]

BLAST of Lsi05G018090 vs. TrEMBL
Match: A0A0A0L460_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133210 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-39
Identity = 138/185 (74.59%), Postives = 149/185 (80.54%), Query Frame = 1


Query: 1   MEKLFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPT----GGAVRDEKNFIYGGIG 60
           MEKLFVM LLVA+AAAR VP GDQ EFV+AVEVKAAELP     G AVRDEKNFIYGG+G
Sbjct: 1   MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61  GFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGGGGA 120
                     +GGLPMLGG+AGIGKFGGIGGVAGIGSLG PGGLGGGGAG G G    GA
Sbjct: 61  ----------LGGLPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGGAGPGVG----GA 120

Query: 121 NGIGGLAGHGLGGA---GGLAGHGLGGAGGVGGGS---GVGGSSGGVGGDGGAGGG-PVS 175
           +GIGGLAGHGLGGA   GGLAGHGLGGAGGVG GS   G+GGS+GG+GGDGGAGGG PVS
Sbjct: 121 SGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGTGSGIGGIGGSNGGIGGDGGAGGGPPVS 171

[Close]

BLAST of Lsi05G018090 vs. TrEMBL
Match: A0A0D2N7K2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-15
Identity = 100/186 (53.76%), Postives = 121/186 (65.05%), Query Frame = 1


Query: 4   LFVMLLLVA-IAAARSVP-----RGDQVEFVDAVEVKAAELPTGGAVRDEKNFIYGGIGG 63
           LFV +LL A +  AR+VP      G + E +       AE P G  + D+K+F+YGG+GG
Sbjct: 8   LFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVYGGVGG 67

Query: 64  FAGMGGYAGM-GGLPMLGGAAGIGKFGGIGGVAGIG---SLGGPGGLGG-----GGAGGG 123
           FAG+GGYAG+ GGLP++GG  GIGKFGGIGG AGIG    +GG GGLGG     GG GGG
Sbjct: 68  FAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLGGLGGG 127

Query: 124 GGLGGGGANGIGGLAGHGLGGAGGLAGHGLGGAGGVG--GGSGVGGSSGGVGGDGGAGGG 173
            G GGGG  G+GG  G G+GG GG  G G+GG GG G  G  GVG  +GG+GG GG GG 
Sbjct: 128 TGGGGGGLGGLGGGTGGGVGGLGGGTGGGVGGLGGGGCPGTGGVGSGAGGLGGGGGGGGC 187

[Close]

BLAST of Lsi05G018090 vs. TrEMBL
Match: A5AU90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 99/172 (57.56%), Postives = 114/172 (66.28%), Query Frame = 1


Query: 4   LFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPTGGAVRDEKNFI-YGGIGGFAGMG 63
           + ++ L V  A AR VP    V  +DA  V     P G AV D+KNFI YGG+GGFAG+G
Sbjct: 7   MLILALAVVHATARKVPNDQAV--LDA-HVPKVGTPKGAAVGDKKNFITYGGVGGFAGVG 66

Query: 64  GYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGG-GGANGIGG 123
           GYAG+ G+  +GG  G+G  GG GG  G+G LGG GGLGG  AGG GGLGG GG  G+GG
Sbjct: 67  GYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGG--AGGVGGLGGAGGVGGLGG 126

Query: 124 LAG-HGLGGAGGLAGHGLGGAGGVGG--GSGVGGSSGGVGGDGGAGGGPVSG 171
             G  GLGGAGGL G  LGGAGG+GG  G+G GG  GGVGG GGA GG V G
Sbjct: 127 AGGLGGLGGAGGLGG--LGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGG 171

[Close]

BLAST of Lsi05G018090 vs. TrEMBL
Match: F6HS53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 99/172 (57.56%), Postives = 114/172 (66.28%), Query Frame = 1


Query: 4   LFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPTGGAVRDEKNFI-YGGIGGFAGMG 63
           + ++ L V  A AR VP    V  +DA  V     P G AV D+KNFI YGG+GGFAG+G
Sbjct: 7   MLILALAVVHATARKVPNDQAV--LDA-HVPKVGTPKGAAVGDKKNFITYGGVGGFAGVG 66

Query: 64  GYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGG-GGANGIGG 123
           GYAG+ G+  +GG  G+G  GG GG  G+G LGG GGLGG  AGG GGLGG GG  G+GG
Sbjct: 67  GYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGG--AGGVGGLGGAGGVGGLGG 126

Query: 124 LAG-HGLGGAGGLAGHGLGGAGGVGG--GSGVGGSSGGVGGDGGAGGGPVSG 171
             G  GLGGAGGL G  LGGAGG+GG  G+G GG  GGVGG GGA GG V G
Sbjct: 127 AGGLGGLGGAGGLGG--LGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGG 171

[Close]

BLAST of Lsi05G018090 vs. TrEMBL
Match: A0A061EL44_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020407 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.5e-12
Identity = 83/154 (53.90%), Postives = 99/154 (64.29%), Query Frame = 1


Query: 5   FVMLLLVAIAA--ARSVP-----RGDQVEFVDAVEVKA-------AELPTGGAVRDEKNF 64
           F +LL+VA+ A  AR+VP        Q    D+ + +        A+ P G  + D+KNF
Sbjct: 7   FFVLLMVAVHASQARNVPGDVGLNSQQTTMPDSSKEQTLQANAPKADSPKGKGIDDKKNF 66

Query: 65  IYGGIGGFAGMGGYAGM-GGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGG 124
           IYGG+GGFAG+GGYAG+ GGLP++GG  GIGKFGGIGG AGIG   G GGLGG G  GG 
Sbjct: 67  IYGGVGGFAGLGGYAGVVGGLPLVGGLGGIGKFGGIGGAAGIGGYHGIGGLGGLGEAGGL 126

Query: 125 GLGGGGANGIGGLAGHGLGGAGGLAGHGLGGAGG 144
              GGGA G+GGL     GGAGG AG GLGGA G
Sbjct: 127 ---GGGAGGVGGLG----GGAGGAAGGGLGGATG 153

[Close]

BLAST of Lsi05G018090 vs. TAIR10
Match: AT1G04660.1 (AT1G04660.1 glycine-rich protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 95/199 (47.74%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 4   LFVMLLLVAI----AAARSVP--------RGDQVEFVDAVEVKAAELPTGGAVRDEKNFI 63
           L V+ +L+AI    A AR VP         G        +  KAA+     +V D+K   
Sbjct: 5   LSVVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMHAKAADQLPPKSVGDKKC-- 64

Query: 64  YGGIGGFAGMGGYAGMG--------GLPMLGGAAGIGKFGGIGGVAGIG---SLGGPGGL 123
              IGG AG+GG+AG+G        G+P++GG  GIGK+GGIGG AGIG   S+GG GGL
Sbjct: 65  ---IGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGL 124

Query: 124 G--GGGAGGGGGLGG--GGANGIGGLAGHGLGGAGGLAGHGLGGAGGVGGGSGVGGSSGG 173
           G  GGG GG GG+GG  GG  G+GGL G GLGG GG+ G G+G AGG+GG  G+GG+ GG
Sbjct: 125 GGVGGGVGGLGGVGGGVGGLGGVGGLGGAGLGGVGGVGG-GIGKAGGIGGLGGLGGAGGG 184

[Close]

BLAST of Lsi05G018090 vs. TAIR10
Match: AT2G32690.1 (AT2G32690.1 glycine-rich protein 23)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 71/120 (59.17%), Postives = 81/120 (67.50%), Query Frame = 1


Query: 53  GGIGGFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLG 112
           GG+GG  G+GG  G+GG   LGG +G+G  GG+GG +G+G  GG GG GGGG GGGGGLG
Sbjct: 79  GGLGGGGGLGGGGGLGGGGGLGGGSGLGGGGGLGGGSGLGGGGGLGGGGGGGLGGGGGLG 138

Query: 113 GGGANGIGGLAGHGLGGAGGL-AGHGLGGAGGVGGGSGVGGSSG-GVGGDGGAGGGPVSG 171
           GG   G GG AG GLGG GG+  G G GG GG G G G GG  G G+GG GG GGG V G
Sbjct: 139 GGAGGGYGGGAGGGLGGGGGIGGGGGFGGGGGGGFGGGAGGGFGKGIGGGGGLGGGYVGG 198

[Close]

BLAST of Lsi05G018090 vs. NCBI nr
Match: gi|778688449|ref|XP_011652752.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 148/185 (80.00%), Postives = 159/185 (85.95%), Query Frame = 1


Query: 1   MEKLFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPT----GGAVRDEKNFIYGGIG 60
           MEKLFVM LLVA+AAAR VP GDQ EFV+AVEVKAAELP     G AVRDEKNFIYGG+G
Sbjct: 1   MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61  GFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGGGGA 120
           GFAGMGGYAG+GGLPMLGG+AGIGKFGGIGGVAGIGSLG PGGLGGGGAG G G    GA
Sbjct: 61  GFAGMGGYAGLGGLPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGGAGPGVG----GA 120

Query: 121 NGIGGLAGHGLGGA---GGLAGHGLGGAGGVGGGS---GVGGSSGGVGGDGGAGGG-PVS 175
           +GIGGLAGHGLGGA   GGLAGHGLGGAGGVG GS   G+GGS+GG+GGDGGAGGG PVS
Sbjct: 121 SGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGTGSGIGGIGGSNGGIGGDGGAGGGPPVS 180

[Close]

BLAST of Lsi05G018090 vs. NCBI nr
Match: gi|659077743|ref|XP_008439361.1| (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 5.4e-44
Identity = 141/185 (76.22%), Postives = 153/185 (82.70%), Query Frame = 1


Query: 1   MEKLFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPT----GGAVRDEKNFIYGGIG 60
           MEKLFV+ LLVAIAAAR VP GDQ EFV+AVEVKA ELP     G  VRDEKNFIYGG+G
Sbjct: 1   MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAVELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 61  GFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGGGGA 120
           GFAGMGGYAG+GG PMLGG+AGIGKFGGIGGVAGIGSLG PGGLGGG        G GGA
Sbjct: 61  GFAGMGGYAGLGGFPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGA-------GAGGA 120

Query: 121 NGIGGLAGHGLGGA---GGLAGHGLGGAGGVGGGS---GVGGSSGGVGGDGGAGGG-PVS 175
           +GIGGLAGHGLGGA   GGLAGHGLGGAGG+G GS   G+GGS+GG+GGDGGAGGG PVS
Sbjct: 121 SGIGGLAGHGLGGAGGIGGLAGHGLGGAGGIGTGSGIGGIGGSNGGIGGDGGAGGGPPVS 178

[Close]

BLAST of Lsi05G018090 vs. NCBI nr
Match: gi|700201637|gb|KGN56770.1| (hypothetical protein Csa_3G133210 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.9e-39
Identity = 138/185 (74.59%), Postives = 149/185 (80.54%), Query Frame = 1


Query: 1   MEKLFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPT----GGAVRDEKNFIYGGIG 60
           MEKLFVM LLVA+AAAR VP GDQ EFV+AVEVKAAELP     G AVRDEKNFIYGG+G
Sbjct: 1   MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 61  GFAGMGGYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGGGGA 120
                     +GGLPMLGG+AGIGKFGGIGGVAGIGSLG PGGLGGGGAG G G    GA
Sbjct: 61  ----------LGGLPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGGAGPGVG----GA 120

Query: 121 NGIGGLAGHGLGGA---GGLAGHGLGGAGGVGGGS---GVGGSSGGVGGDGGAGGG-PVS 175
           +GIGGLAGHGLGGA   GGLAGHGLGGAGGVG GS   G+GGS+GG+GGDGGAGGG PVS
Sbjct: 121 SGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGTGSGIGGIGGSNGGIGGDGGAGGGPPVS 171

[Close]

BLAST of Lsi05G018090 vs. NCBI nr
Match: gi|763761018|gb|KJB28272.1| (hypothetical protein B456_005G039500 [Gossypium raimondii])

HSP 1 Score: 89.4 bits (220), Expect = 6.9e-15
Identity = 100/186 (53.76%), Postives = 121/186 (65.05%), Query Frame = 1


Query: 4   LFVMLLLVA-IAAARSVP-----RGDQVEFVDAVEVKAAELPTGGAVRDEKNFIYGGIGG 63
           LFV +LL A +  AR+VP      G + E +       AE P G  + D+K+F+YGG+GG
Sbjct: 8   LFVFVLLTAHVCHARNVPGNNGLNGSKKEQIMEANAPKAESPKGNGIDDKKHFVYGGVGG 67

Query: 64  FAGMGGYAGM-GGLPMLGGAAGIGKFGGIGGVAGIG---SLGGPGGLGG-----GGAGGG 123
           FAG+GGYAG+ GGLP++GG  GIGKFGGIGG AGIG    +GG GGLGG     GG GGG
Sbjct: 68  FAGVGGYAGVAGGLPLVGGLGGIGKFGGIGGAAGIGGYKGIGGVGGLGGGIGGLGGLGGG 127

Query: 124 GGLGGGGANGIGGLAGHGLGGAGGLAGHGLGGAGGVG--GGSGVGGSSGGVGGDGGAGGG 173
            G GGGG  G+GG  G G+GG GG  G G+GG GG G  G  GVG  +GG+GG GG GG 
Sbjct: 128 TGGGGGGLGGLGGGTGGGVGGLGGGTGGGVGGLGGGGCPGTGGVGSGAGGLGGGGGGGGC 187

[Close]

BLAST of Lsi05G018090 vs. NCBI nr
Match: gi|731390143|ref|XP_010650249.1| (PREDICTED: glycine-rich cell wall structural protein [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 99/172 (57.56%), Postives = 114/172 (66.28%), Query Frame = 1


Query: 4   LFVMLLLVAIAAARSVPRGDQVEFVDAVEVKAAELPTGGAVRDEKNFI-YGGIGGFAGMG 63
           + ++ L V  A AR VP    V  +DA  V     P G AV D+KNFI YGG+GGFAG+G
Sbjct: 7   MLILALAVVHATARKVPNDQAV--LDA-HVPKVGTPKGAAVGDKKNFITYGGVGGFAGVG 66

Query: 64  GYAGMGGLPMLGGAAGIGKFGGIGGVAGIGSLGGPGGLGGGGAGGGGGLGG-GGANGIGG 123
           GYAG+ G+  +GG  G+G  GG GG  G+G LGG GGLGG  AGG GGLGG GG  G+GG
Sbjct: 67  GYAGVAGVLPVGGVGGVGGLGGAGGAGGLGGLGGVGGLGG--AGGVGGLGGAGGVGGLGG 126

Query: 124 LAG-HGLGGAGGLAGHGLGGAGGVGG--GSGVGGSSGGVGGDGGAGGGPVSG 171
             G  GLGGAGGL G  LGGAGG+GG  G+G GG  GGVGG GGA GG V G
Sbjct: 127 AGGLGGLGGAGGLGG--LGGAGGLGGGAGAGAGGGVGGVGGVGGAAGGGVGG 171

The following BLAST results are available for this feature:

BLAST of Lsi05G018090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G018090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L460_CUCSA	4.8e-39	74.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133210 PE=4 SV=1	[more]
A0A0D2N7K2_GOSRA	4.8e-15	53.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G039500 PE=4 SV=1	[more]
A5AU90_VITVI	3.5e-13	57.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031043 PE=4 SV=1	[more]
F6HS53_VITVI	3.5e-13	57.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00530 PE=4 SV=...	[more]
A0A061EL44_THECC	8.5e-12	53.90	Uncharacterized protein OS=Theobroma cacao GN=TCM_020407 PE=4 SV=1	[more]

BLAST of Lsi05G018090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04660.1	1.5e-07	47.74	glycine-rich protein	[more]
AT2G32690.1	2.1e-06	59.17	glycine-rich protein 23	[more]

BLAST of Lsi05G018090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688449\|ref\|XP_011652752.1\|	1.2e-46	80.00	PREDICTED: glycine-rich cell wall structural protein [Cucumis sativus]	[more]
gi\|659077743\|ref\|XP_008439361.1\|	5.4e-44	76.22	PREDICTED: glycine-rich cell wall structural protein [Cucumis melo]	[more]
gi\|700201637\|gb\|KGN56770.1\|	6.9e-39	74.59	hypothetical protein Csa_3G133210 [Cucumis sativus]	[more]
gi\|763761018\|gb\|KJB28272.1\|	6.9e-15	53.76	hypothetical protein B456_005G039500 [Gossypium raimondii]	[more]
gi\|731390143\|ref\|XP_010650249.1\|	5.0e-13	57.56	PREDICTED: glycine-rich cell wall structural protein [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G018090.1	Lsi05G018090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 95..110 score: 6.8E-8coord: 125..135 score: 6.8E-8coord: 154..172 score: 6.8E-8coord: 2..18 score: 6.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G018090	Cla021448	Watermelon (97103) v1	lsiwmB365
Lsi05G018090	MELO3C006340.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G018090	Cla97C05G084270	Watermelon (97103) v2	lsiwmbB333
Lsi05G018090	Bhi01G000005	Wax gourd	lsiwgoB452
Lsi05G018090	CsaV3_3G011310	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G018090	Cucumber (Chinese Long) v3	cuclsiB139
Lsi05G018090	Cucumber (Chinese Long) v3	cuclsiB220
Lsi05G018090	Watermelon (97103) v2	lsiwmbB341
Lsi05G018090	Watermelon (97103) v2	lsiwmbB347
Lsi05G018090	Wax gourd	lsiwgoB421
Lsi05G018090	Wax gourd	lsiwgoB462
Lsi05G018090	Bottle gourd (USVL1VR-Ls)	lsilsiB011
Lsi05G018090	Bottle gourd (USVL1VR-Ls)	lsilsiB156
Lsi05G018090	Cucumber (Gy14) v1	cgylsiB226
Lsi05G018090	Cucumber (Gy14) v1	cgylsiB415
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB356
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB487
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB586
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G018090	Cucurbita maxima (Rimu)	cmalsiB839
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB345
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB471
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB566
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G018090	Cucurbita moschata (Rifu)	cmolsiB823
Lsi05G018090	Cucurbita pepo (Zucchini)	cpelsiB120
Lsi05G018090	Cucurbita pepo (Zucchini)	cpelsiB267
Lsi05G018090	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G018090	Cucurbita pepo (Zucchini)	cpelsiB617
Lsi05G018090	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G018090	Wild cucumber (PI 183967)	cpilsiB125
Lsi05G018090	Wild cucumber (PI 183967)	cpilsiB201
Lsi05G018090	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G018090	Cucumber (Chinese Long) v2	culsiB127
Lsi05G018090	Cucumber (Chinese Long) v2	culsiB203
Lsi05G018090	Cucumber (Chinese Long) v2	culsiB209
Lsi05G018090	Melon (DHL92) v3.5.1	lsimeB358
Lsi05G018090	Melon (DHL92) v3.5.1	lsimeB360
Lsi05G018090	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G018090	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G018090	Watermelon (Charleston Gray)	lsiwcgB343
Lsi05G018090	Watermelon (Charleston Gray)	lsiwcgB349
Lsi05G018090	Watermelon (97103) v1	lsiwmB360
Lsi05G018090	Watermelon (97103) v1	lsiwmB382
Lsi05G018090	Cucumber (Gy14) v2	cgyblsiB115
Lsi05G018090	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G018090	Melon (DHL92) v3.6.1	lsimedB375
Lsi05G018090	Silver-seed gourd	carlsiB206
Lsi05G018090	Silver-seed gourd	carlsiB210
Lsi05G018090	Silver-seed gourd	carlsiB878
Lsi05G018090	Silver-seed gourd	carlsiB983