Cucurbit variant projects in CuGenDBv2

IDProject titleProject descriptionReference genomeSample list
P01Watermelon resequencing (SNP v3)Genome resequencing was performed for a total of 547 watermelon accessions, including 243 cultivars, 88 landraces, 18 Citrullus lanatus var. cordophanus, 31 C. mucosospermus, 131 C. amarus and 36 C. colocynthis accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.Watermelon 97103 genome (v2.5)Download
P02Watermelon resequencing (indel v3)Genome resequencing was performed for a total of 547 watermelon accessions, including 243 cultivars, 88 landraces, 18 Citrullus lanatus var. cordophanus, 31 C. mucosospermus, 131 C. amarus and 36 C. colocynthis accessions. Small indels were called and biallelic indels with minor allele frequency > 0.01 were kept.Watermelon 97103 genome (v2.5)Download
P03Watermelon GBS SNPsGenotyping-by-sequencing was performed for a total of 1,365 watermelon accessions, including 1,211 Citrullus lanatus, 52 C. mucosospermus and 102 C. amarus accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.Charleston Gray genome (v2.5)Download
P04Cucumber core resequencing (SNP)Genome resequencing was performed for the cucumber core collection comprising a total of 388 accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.Gy14 genome (v2.1)Download
P05Cucumber core resequencing (indel)Genome resequencing was performed for the cucumber core collection comprising a total of 388 accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept.Gy14 genome (v2.1)Download
P06Cucumber GBS SNPsGenotyping-by-sequencing was performed for a total of 1,234 cucumber accessions and three other Cucumis accessions used as the outgroup. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept Gy14 genome (v2.1)Download
P07Melon GBS SNPsGenotyping-by-sequencing was performed for a total of 2,083 melon accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were keptDHL92 genome (v4)Download
P08Cucurbita pepo GBS SNPsGenotyping-by-sequencing was performed for a total of 830 Cucurbita pepo accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.C. pepo MU-CU-16 genome (v4.1)Download
P09Cucurbita maxima GBS SNPsGenotyping-by-sequencing was performed for a total of 372 Cucurbita maxima accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.C. maxima Rimu genome (v1.1)Download
P10Cucurbita moschata GBS SNPsGenotyping-by-sequencing was performed for a total of 314 Cucurbita moschata accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.C. moschata Rifu genome (v1)Download
P11Squash core resequencing (SNP)Genome resequencing was performed for the squash core collection comprising a total of 206 accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.MU‐CU‐16 genome (v4.1)Download
P12Squash core resequencing (indel)Genome resequencing was performed for the squash core collection comprising a total of 206 accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept.MU‐CU‐16 genome (v4.1)Download
P13Bottle gourd resequencing (SNP)Genome resequencing was performed for a total of 197 bottle gourd accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept.USVL1VR-Ls genome (v1)Download
P14Bottle gourd resequencing (indel)Genome resequencing was performed for a total of 197 bottle gourd accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept.USVL1VR-Ls genome (v1)Download