MELO3C021669 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021669
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S19-3, putative
Location	chr12 : 15300501 .. 15300650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

mRNA sequence

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Coding sequence (CDS)

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Protein sequence

MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN*

Homology

[Close]

BLAST of MELO3C021669 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.2e-07
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARKIY RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-07
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-07
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

The following BLAST results are available for this feature:

BLAST of MELO3C021669 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15520.1	6.2e-07	75.86	Ribosomal protein S19e family protein	[more]
AT3G02080.1	8.1e-07	72.41	Ribosomal protein S19e family protein	[more]
AT5G61170.1	8.1e-07	72.41	Ribosomal protein S19e family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001266	Ribosomal_S19e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021669T1	MELO3C021669T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	PRODOM	PD003854		coord: 1..29 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021669	Wild cucumber (PI 183967)	cpimeB451
MELO3C021669	Watermelon (Charleston Gray)	mewcgB136
MELO3C021669	Watermelon (97103) v1	mewmB165
MELO3C021669	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C021669	Bottle gourd (USVL1VR-Ls)	lsimeB129
MELO3C021669	Bottle gourd (USVL1VR-Ls)	lsimeB176
MELO3C021669	Cucumber (Gy14) v2	cgybmeB396
MELO3C021669	Cucumber (Chinese Long) v3	cucmeB029
MELO3C021669	Watermelon (97103) v2	mewmbB139
MELO3C021669	Cucumber (Gy14) v1	cgymeB018
MELO3C021669	Cucumber (Gy14) v1	cgymeB527
MELO3C021669	Cucurbita maxima (Rimu)	cmameB361