MELO3C021669T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021669T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S19-3, putative
Location	chr12 : 15300501 .. 15300650 (-)
Sequence length	150

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

mRNA sequence

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Coding sequence (CDS)

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Protein sequence

MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN*

Homology

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BLAST of MELO3C021669T1 vs. TAIR10
Match: AT5G15520.1 (AT5G15520.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.2e-07
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARKIY RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669T1 vs. TAIR10
Match: AT3G02080.1 (AT3G02080.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-07
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669T1 vs. TAIR10
Match: AT5G61170.1 (AT5G61170.1 Ribosomal protein S19e family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-07
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

The following BLAST results are available for this feature:

BLAST of MELO3C021669T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15520.1	6.2e-07	75.86	Ribosomal protein S19e family protein	[more]
AT3G02080.1	8.1e-07	72.41	Ribosomal protein S19e family protein	[more]
AT5G61170.1	8.1e-07	72.41	Ribosomal protein S19e family protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001266	Ribosomal_S19e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021669	MELO3C021669	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021669T1	MELO3C021669T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021669T1.cds1	MELO3C021669T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	PRODOM	PD003854		coord: 1..29 score: 4.