MELO3C024657 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024657
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVariant surface antigen F
Locationchr2 : 19759522 .. 19760511 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAGTGATGACGATGAAGCAATTTTGCCTTTGCCTCTCTAAGATGACGATGATGACGCAACTCCACCTCTACTCTCTCCAAGATGATAATGATATATGATGCATCTTTGCCTCTGCGTCTCCAAGATGATGACAATGTTGCTGCTCTGCTTCTACATCTCTAAGATGACAATGGTGTTGTAGCTCCACCTCCCTCTCTCCAAGATGAAGATGACTATGTAGCTTTGCCTCTACCTCTCCAAAAGGATGATGGTGTAGCTTCAAGAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGGTGCAGCTCCACCTCCGCCTCTTTAAGATGACAATAATGGTGCAGCATCGCCTCTCTAAAATGACGATGATGATGCAGCTCTGCCTCCGCCTATCTAAGATGATGATGATGGTGCAACTCTAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

mRNA sequence

ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

Coding sequence (CDS)

ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

Protein sequence

MMVQLREDDDGATLPPPLQDDNDDATSFPHLEKYDDGKARPLPLQKDDASAAPPLPIQEDDDDATLPRISKKDKFHISKDDVDNAASPPFVENDDDGATPPSPLQDEDGAIHLFRMMTKYSKCTRSFLLGVEYDGKCLIVLSKSWISDGKVELRCSIIPTREVDLTRNARSSPNRSWITNGEAERRCSIIPTREVNLTTNI*
Homology
[Close]
BLAST of MELO3C024657 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 3   VQLREDDDGATLPPPLQDDNDDATSFPHLEKYDDGKARPLPLQKDDASAAPPLPIQEDDD 62
           + L+ DDDG TLPPPLQ D+D+A+  P                          P+Q+DDD
Sbjct: 73  LSLQNDDDGTTLPPPLQYDDDNASLLP--------------------------PLQDDDD 132

Query: 63  DATLPRISKKDKFHISKDDVDNAASPPFVENDDDGATPPSPLQDEDGAIHLFR 116
            ATLP       FH  +DD D A SPP +++DDDGA  P PLQ+EDG + L +
Sbjct: 133 SATLP------SFHSLQDDED-ALSPP-LQDDDDGAALPLPLQNEDGVVPLLQ 151

[Close]
BLAST of MELO3C024657 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 50.4 bits (119), Expect = 4.1e-03
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1 

Query: 5   LREDDDGATLPPPLQDDNDDAT--SF-----------PHLEKYDDGKARPLPLQKDDASA 64
           L+ DDD A+L PPLQDD+D AT  SF           P L+  DDG A PLPLQ +D   
Sbjct: 88  LQYDDDNASLLPPLQDDDDSATLPSFHSLQDDEDALSPPLQDDDDGAALPLPLQNEDG-- 147

Query: 65  APPLPIQEDDDDATLP 68
              +P+ ++D    +P
Sbjct: 148 --VVPLLQNDGKMKMP 159


HSP 2 Score: 30.4 bits (67), Expect = 4.4e+03
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1 

Query: 86  ASPPFVENDDDGATPPSPLQ-DEDGA 111
           A P  ++NDDDG T P PLQ D+D A
Sbjct: 70  ALPLSLQNDDDGTTLPPPLQYDDDNA 95

The following BLAST results are available for this feature:
BLAST of MELO3C024657 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114278|ref|XP_008456987.1|4.1e-1141.59PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
gi|659114278|ref|XP_008456987.1|4.1e-0342.11PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024657T1MELO3C024657T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024657Silver-seed gourdcarmeB0020
MELO3C024657Silver-seed gourdcarmeB0896
MELO3C024657Cucumber (Chinese Long) v3cucmeB045
MELO3C024657Watermelon (97103) v2mewmbB262
MELO3C024657Watermelon (97103) v2mewmbB264
MELO3C024657Watermelon (97103) v2mewmbB266
MELO3C024657Wax gourdmewgoB310
MELO3C024657Cucumber (Gy14) v1cgymeB484
MELO3C024657Cucurbita maxima (Rimu)cmameB109
MELO3C024657Cucurbita maxima (Rimu)cmameB071
MELO3C024657Cucurbita moschata (Rifu)cmomeB064
MELO3C024657Cucurbita moschata (Rifu)cmomeB102
MELO3C024657Wild cucumber (PI 183967)cpimeB045
MELO3C024657Cucumber (Chinese Long) v2cumeB045
MELO3C024657Watermelon (Charleston Gray)mewcgB259
MELO3C024657Watermelon (97103) v1mewmB290
MELO3C024657Watermelon (97103) v1mewmB292
MELO3C024657Cucurbita pepo (Zucchini)cpemeB617
MELO3C024657Cucurbita pepo (Zucchini)cpemeB686
MELO3C024657Bottle gourd (USVL1VR-Ls)lsimeB401
MELO3C024657Cucumber (Gy14) v2cgybmeB041