MELO3C024657T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024657T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVariant surface antigen F
Locationchr2 : 19759522 .. 19760511 (+)
Sequence length606
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAGTGATGACGATGAAGCAATTTTGCCTTTGCCTCTCTAAGATGACGATGATGACGCAACTCCACCTCTACTCTCTCCAAGATGATAATGATATATGATGCATCTTTGCCTCTGCGTCTCCAAGATGATGACAATGTTGCTGCTCTGCTTCTACATCTCTAAGATGACAATGGTGTTGTAGCTCCACCTCCCTCTCTCCAAGATGAAGATGACTATGTAGCTTTGCCTCTACCTCTCCAAAAGGATGATGGTGTAGCTTCAAGAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGGTGCAGCTCCACCTCCGCCTCTTTAAGATGACAATAATGGTGCAGCATCGCCTCTCTAAAATGACGATGATGATGCAGCTCTGCCTCCGCCTATCTAAGATGATGATGATGGTGCAACTCTAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

mRNA sequence

ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

Coding sequence (CDS)

ATGATGGTACAACTTCGAGAGGACGATGATGGTGCAACTCTACCTCCACCTCTCCAAGATGACAATGACGATGCAACTTCATTTCCACATCTCGAAAAATATGATGATGGGAAAGCTCGACCTCTACCTCTCCAAAAAGATGACGCCAGTGCAGCTCCACCTCTGCCTATCCAAGAAGACGATGACGATGCAACTTTGCCTCGCATATCCAAGAAGGACAAGTTCCACATCTCTAAAGATGACGTCGACAATGCAGCTTCGCCTCCATTTGTTGAAAATGACGATGATGGTGCAACTCCACCTTCGCCTCTCCAAGATGAAGATGGTGCAATTCACTTATTTAGAATGATGACAAAGTACAGCAAATGTACCCGATCATTCCTTCTAGGAGTTGAATATGACGGTAAATGCCTGATCGTCCTTAGTAAAAGTTGGATCTCTGATGGCAAAGTAGAGCTAAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTGACACGAAATGCTAGATCGTCTCCTAATAGAAGTTGGATAACTAATGGCGAGGCAGAACGAAGATGCTCGATTATTCCTACTAGGGAGGTGAATCTAACGACAAATATCTGA

Protein sequence

MMVQLREDDDGATLPPPLQDDNDDATSFPHLEKYDDGKARPLPLQKDDASAAPPLPIQEDDDDATLPRISKKDKFHISKDDVDNAASPPFVENDDDGATPPSPLQDEDGAIHLFRMMTKYSKCTRSFLLGVEYDGKCLIVLSKSWISDGKVELRCSIIPTREVDLTRNARSSPNRSWITNGEAERRCSIIPTREVNLTTNI*
Homology
[Close]
BLAST of MELO3C024657T1 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 1 

Query: 3   VQLREDDDGATLPPPLQDDNDDATSFPHLEKYDDGKARPLPLQKDDASAAPPLPIQEDDD 62
           + L+ DDDG TLPPPLQ D+D+A+  P                          P+Q+DDD
Sbjct: 73  LSLQNDDDGTTLPPPLQYDDDNASLLP--------------------------PLQDDDD 132

Query: 63  DATLPRISKKDKFHISKDDVDNAASPPFVENDDDGATPPSPLQDEDGAIHLFR 116
            ATLP       FH  +DD D A SPP +++DDDGA  P PLQ+EDG + L +
Sbjct: 133 SATLP------SFHSLQDDED-ALSPP-LQDDDDGAALPLPLQNEDGVVPLLQ 151

[Close]
BLAST of MELO3C024657T1 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 50.4 bits (119), Expect = 4.1e-03
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1 

Query: 5   LREDDDGATLPPPLQDDNDDAT--SF-----------PHLEKYDDGKARPLPLQKDDASA 64
           L+ DDD A+L PPLQDD+D AT  SF           P L+  DDG A PLPLQ +D   
Sbjct: 88  LQYDDDNASLLPPLQDDDDSATLPSFHSLQDDEDALSPPLQDDDDGAALPLPLQNEDG-- 147

Query: 65  APPLPIQEDDDDATLP 68
              +P+ ++D    +P
Sbjct: 148 --VVPLLQNDGKMKMP 159


HSP 2 Score: 30.4 bits (67), Expect = 4.4e+03
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1 

Query: 86  ASPPFVENDDDGATPPSPLQ-DEDGA 111
           A P  ++NDDDG T P PLQ D+D A
Sbjct: 70  ALPLSLQNDDDGTTLPPPLQYDDDNA 95

The following BLAST results are available for this feature:
BLAST of MELO3C024657T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114278|ref|XP_008456987.1|4.1e-1141.59PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
gi|659114278|ref|XP_008456987.1|4.1e-0342.11PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024657MELO3C024657gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024657T1MELO3C024657T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024657T1.cds1MELO3C024657T1.cds1CDS
MELO3C024657T1.cds2MELO3C024657T1.cds2CDS
MELO3C024657T1.cds3MELO3C024657T1.cds3CDS