CU084781 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU084781
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSmall heat shock protein 23.8
LocationChr3 : 2118264 .. 2121865 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGGGGCTGGGACGTGAAAGAAGACGACAACGCTCTATATCTCCGAATGGACATGCCTGGACTAAGCAAAGATGATGTTGAGGGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGAGAGGGAGCGAAAGAATCTGAAGACGAAGAAGATCGTAGACGATTCTCAAGCAGACTGGACTTGCCTGCGAATCTGTACGAACTGAATTCAATCAAAGCAGAGATGAAGAATGGGGTGCTGAAAGTGGCAGTGC
Homology
[Close]
BLAST of CU084781 vs. Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 30/56 (53.57%), Postives = 33/56 (58.93%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           +SVEQNTLIIKGEGAK                 P  LY+++ I+AEMKNGVLKV V
Sbjct: 139 ISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVV 194

Query: 144  203
           
Sbjct: 199  194

Query: 204  252
           
Sbjct: 259  194


HSP 2 Score: 44.7 bits (104), Expect = 5.9e-04
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 1 

Query: 1   RGWDVKEDDNALYLRMDMPGLSKDDVE 60
           RGWD +E ++AL+LR+DMPGL+K+DV+
Sbjct: 112 RGWDARETEDALHLRVDMPGLAKEDVK 138

Query: 61   82
           
Sbjct: 172  138

[Close]
BLAST of CU084781 vs. TrEMBL
Match: A0A0A0L1K2_CUCSA (Mitochondrial small heat shock protein OS=Cucumis sativus GN=Csa_3G020090 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE  K                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 141 VSVEQNTLIIKGEAEKESEDEEDLRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 196

Query: 144  203
           
Sbjct: 201  196

Query: 204  252
           
Sbjct: 261  196

[Close]
BLAST of CU084781 vs. TrEMBL
Match: A0A0A0L1K2_CUCSA (Mitochondrial small heat shock protein OS=Cucumis sativus GN=Csa_3G020090 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-05
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1 

Query: 1   RGWDVKEDDNALYLRMDMPGLSKDDVEG*VWSRTH*SSKERERKN 60
           RGWDVKEDDN LYLRMDMPGL KDDV+  V   T     E E+++
Sbjct: 114 RGWDVKEDDNCLYLRMDMPGLGKDDVKVSVEQNTLIIKGEAEKES 158

Query: 61   120
           
Sbjct: 174  158

Query: 121  136
           
Sbjct: 234  158


HSP 2 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 33/56 (58.93%), Postives = 35/56 (62.50%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGEG K                 PANLY+ + IKAEMKNGVLKV V
Sbjct: 129 VSVEQNTLIIKGEGGKELENDETGRKYTSRIDLPANLYKFDEIKAEMKNGVLKVVV 184

Query: 144  203
           
Sbjct: 189  184

Query: 204  252
           
Sbjct: 249  184

[Close]
BLAST of CU084781 vs. TrEMBL
Match: D7TN47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00480 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.8e-03
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 

Query: 1   RGWDVKEDDNALYLRMDMPGLSKDDVE 60
           RGWDVKE+ +AL++RMDMPGL K+DV+
Sbjct: 102 RGWDVKEEKDALFVRMDMPGLGKEDVK 128

Query: 61   82
           
Sbjct: 162  128


HSP 2 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 

Query: 1   RGWDVKEDDNALYLRMDMPGLSKDDV 60
           RGWDVKEDDNALYLRMDMPGLSKDDV
Sbjct: 113 RGWDVKEDDNALYLRMDMPGLSKDDV 138

Query: 61   79
           
Sbjct: 173  138

[Close]
BLAST of CU084781 vs. TrEMBL
Match: D9IAX1_CAPAN (Mitochondrial small heat shock protein OS=Capsicum annuum GN=HSP24 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           V+VE+NTLIIKGEG K                 P NLY+L+ IKAEMKNGVLKVAV
Sbjct: 139 VAVEENTLIIKGEGEKESEDEEYRRRYSTRLEIPQNLYKLDGIKAEMKNGVLKVAV 194

Query: 144  203
           
Sbjct: 199  194

Query: 204  252
           
Sbjct: 259  194

[Close]
BLAST of CU084781 vs. TrEMBL
Match: D9IAX1_CAPAN (Mitochondrial small heat shock protein OS=Capsicum annuum GN=HSP24 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-03
Identity = 19/27 (70.37%), Postives = 26/27 (96.30%), Query Frame = 1 

Query: 1   RGWDVKEDDNALYLRMDMPGLSKDDVE 60
           RGWDV+EDD+ALY++MDMPGL K++V+
Sbjct: 112 RGWDVREDDDALYIKMDMPGLDKENVK 138

Query: 61   82
           
Sbjct: 172  138


HSP 2 Score: 58.5 bits (140), Expect = 4.4e-06
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           V+VE+NTLIIKGEG K                 P N+Y+L+ IKAEMKNGVLKVAV
Sbjct: 138 VAVEENTLIIKGEGEKESENEEYRRRYSTRLEIPQNIYKLDGIKAEMKNGVLKVAV 193

Query: 144  203
           
Sbjct: 198  193

Query: 204  252
           
Sbjct: 258  193

[Close]
BLAST of CU084781 vs. NCBI nr
Match: gi|659095976|ref|XP_008448860.1| (PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 38/56 (67.86%), Postives = 38/56 (67.86%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE AK                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 141 VSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 196

Query: 144  203
           
Sbjct: 201  196

Query: 204  252
           
Sbjct: 261  196

[Close]
BLAST of CU084781 vs. NCBI nr
Match: gi|659095978|ref|XP_008448861.1| (PREDICTED: small heat shock protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 38/56 (67.86%), Postives = 38/56 (67.86%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE AK                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 140 VSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 195

Query: 144  203
           
Sbjct: 200  195

Query: 204  252
           
Sbjct: 260  195

[Close]
BLAST of CU084781 vs. NCBI nr
Match: gi|659095963|ref|XP_008448853.1| (PREDICTED: small heat shock protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 38/56 (67.86%), Postives = 38/56 (67.86%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE AK                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 140 VSVEQNTLIIKGEEAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 195

Query: 144  203
           
Sbjct: 200  195

Query: 204  252
           
Sbjct: 260  195

[Close]
BLAST of CU084781 vs. NCBI nr
Match: gi|659095961|ref|XP_008448852.1| (PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 38/56 (67.86%), Postives = 38/56 (67.86%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE AK                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 141 VSVEQNTLIIKGEEAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 196

Query: 144  203
           
Sbjct: 201  196

Query: 204  252
           
Sbjct: 261  196

[Close]
BLAST of CU084781 vs. NCBI nr
Match: gi|700200737|gb|KGN55870.1| (Mitochondrial small heat shock protein [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-09
Identity = 37/56 (66.07%), Postives = 37/56 (66.07%), Query Frame = 3 

Query: 84  VSVEQNTLIIKGEGAKXXXXXXXXXXXXXXXXXPANLYELNSIKAEMKNGVLKVAV 143
           VSVEQNTLIIKGE  K                 PANLYELNSIKAEMKNGVLKVAV
Sbjct: 141 VSVEQNTLIIKGEAEKESEDEEDLRRFSSRLDLPANLYELNSIKAEMKNGVLKVAV 196

Query: 144  203
           
Sbjct: 201  196

Query: 204  252
           
Sbjct: 261  196

The following BLAST results are available for this feature:
BLAST of CU084781 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HS22M_SOYBN1.1e-0753.57Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1[more]
BLAST of CU084781 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K2_CUCSA2.1e-0866.07Mitochondrial small heat shock protein OS=Cucumis sativus GN=Csa_3G020090 PE=3 S... [more]
A0A0A0L1K2_CUCSA1.3e-0562.22Mitochondrial small heat shock protein OS=Cucumis sativus GN=Csa_3G020090 PE=3 S... [more]
D7TN47_VITVI7.8e-0370.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00480 PE=3 SV=... [more]
D9IAX1_CAPAN2.6e-0657.14Mitochondrial small heat shock protein OS=Capsicum annuum GN=HSP24 PE=2 SV=1[more]
D9IAX1_CAPAN2.0e-0370.37Mitochondrial small heat shock protein OS=Capsicum annuum GN=HSP24 PE=2 SV=1[more]
BLAST of CU084781 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095976|ref|XP_008448860.1|2.1e-0967.86PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Cucumis melo... [more]
gi|659095978|ref|XP_008448861.1|2.1e-0967.86PREDICTED: small heat shock protein, chloroplastic-like isoform X2 [Cucumis melo... [more]
gi|659095963|ref|XP_008448853.1|3.5e-0967.86PREDICTED: small heat shock protein, chloroplastic-like isoform X2 [Cucumis melo... [more]
gi|659095961|ref|XP_008448852.1|3.5e-0967.86PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Cucumis melo... [more]
gi|700200737|gb|KGN55870.1|7.9e-0966.07Mitochondrial small heat shock protein [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR002068A-crystallin/Hsp20_dom
IPR008978HSP20-like_chaperone
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G020090Csa3G020090gene
Csa3G020080Csa3G020080gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02NGGILFKNP3UI02NGGILEST
G0199405G0199405EST
H0068966H0068966EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 4..84
score: 8.9
IPR002068Alpha crystallin/Hsp20 domainPROFILEPS01031HSP20coord: 4..85
score: 15
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 3..84
score: 8.1
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 3..84
score: 1.67
NoneNo IPR availablePANTHERPTHR11527:SF136SUBFAMILY NOT NAMEDcoord: 3..84
score: 2.5