CU117108 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU117108
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING-H2 finger protein ATL13
LocationChr2 : 4000234 .. 4000456 (+)
Sequence length223
The following sequences are available for this feature:

transcribed_cluster sequence

GGTGATGGATTTGTCTAGAAAGGGCGTTTTCGTTTCATTTTCCTGCGAATCGGAACCGACCCAGATCGGAAAATGGGATGGGAATGATGGATGAAGAGAATCAGAGAAGAAACAGTTTGGAATTTGTTGAGAATCGGCCGTCGTTTGTGAGAAGAACGTTACAGTGGCTGATGGGAAAGAACAACAATAGGATTGTTCATTCATCTTTTACACCTAATGATGA
BLAST of CU117108 vs. TrEMBL
Match: A0A0A0LH59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047810 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.1e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH
Sbjct: 356 RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 415

Query: 81  SSFTPND 140
           SSFTPND
Sbjct: 416 SSFTPND 422

Query: 141 200
           
Sbjct: 476 422

Query: 201 222
           
Sbjct: 536 422

BLAST of CU117108 vs. TrEMBL
Match: B9IM58_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0018s10760g PE=4 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSF FP N+N     +G    DE+NQ  NSLE     PSF RRTL WL+G+  N++VH
Sbjct: 403 RAFSFRFPVNKNVVA--DGQWGCDEQNQSCNSLELQVKTPSFARRTLLWLVGR-QNKVVH 462

Query: 81  SSFTPN 140
           SSFTPN
Sbjct: 463 SSFTPN 465

Query: 141 200
           
Sbjct: 523 465

Query: 201 219
           
Sbjct: 583 465

BLAST of CU117108 vs. TrEMBL
Match: B9HBN5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s19080g PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-07
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSF FP N+N   +++ + M   ++   + LE  E  PSF RRTL WL+G+  N++VH
Sbjct: 400 RAFSFRFPVNKNVV-ADDDLKMRKGDSDSCHRLELQEKTPSFARRTLLWLVGR-QNKVVH 459

Query: 81  SSFTPN 140
           SSFTPN
Sbjct: 460 SSFTPN 463

Query: 141 200
           
Sbjct: 520 463

Query: 201 219
           
Sbjct: 580 463

BLAST of CU117108 vs. TrEMBL
Match: M1DSC6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043193 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-07
Identity = 40/92 (43.48%), Postives = 47/92 (51.09%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPR--------------------SENGMGMM------DEENQRRNSLE 80
           RAFSF FPAN+N P                     SE  +G        DEENQ  N LE
Sbjct: 394 RAFSFRFPANQNIPVVAEPSGSASAATKNGGRRTVSEIDLGTWENNEGCDEENQCSNRLE 453

Query: 81  FVENRPSFVRRTLQWLMGKNNNRIVHSSFTPN 140
           F    PSF RRTL WLMG+  N++VHSS++ N
Sbjct: 454 FQPKTPSFARRTLFWLMGR-QNKVVHSSYSSN 484

Query: 141 200
           
Sbjct: 514 484

Query: 201 219
           
Sbjct: 574 484

BLAST of CU117108 vs. TrEMBL
Match: K4CBA7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 38/93 (40.86%), Postives = 46/93 (49.46%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRS---------------------------ENGMGMMDEENQRRNSL 80
           RA SF FPAN N P +                           EN +G  DEENQ  N L
Sbjct: 388 RASSFRFPANHNIPVAAQPDDSGSAATKNGCRRTVSEINLGTWENNVGC-DEENQCSNRL 447

Query: 81  EFVENRPSFVRRTLQWLMGKNNNRIVHSSFTPN 140
           E+    PSF RRTL WLMG+  N++VHSS++ N
Sbjct: 448 EYQPKTPSFARRTLSWLMGR-QNKVVHSSYSSN 478

Query: 141 200
           
Sbjct: 508 478

Query: 201 219
           
Sbjct: 568 478

BLAST of CU117108 vs. NCBI nr
Match: gi|449462741|ref|XP_004149099.1| (PREDICTED: RING-H2 finger protein ATL13 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH
Sbjct: 356 RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 415

Query: 81  SSFTPND 140
           SSFTPND
Sbjct: 416 SSFTPND 422

Query: 141 200
           
Sbjct: 476 422

Query: 201 222
           
Sbjct: 536 422

BLAST of CU117108 vs. NCBI nr
Match: gi|659069895|ref|XP_008452317.1| (PREDICTED: RING-H2 finger protein ATL13 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSFHFPANRNRPRSENGMG MDEENQRR+SLE VENRPSFVRRTLQWLMGKNNNRIVH
Sbjct: 356 RAFSFHFPANRNRPRSENGMGTMDEENQRRSSLEIVENRPSFVRRTLQWLMGKNNNRIVH 415

Query: 81  SSFTPND 140
           SSFTPND
Sbjct: 416 SSFTPND 422

Query: 141 200
           
Sbjct: 476 422

Query: 201 222
           
Sbjct: 536 422

BLAST of CU117108 vs. NCBI nr
Match: gi|566215213|ref|XP_002324500.2| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-09
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSF FP N+N     +G    DE+NQ  NSLE     PSF RRTL WL+G+  N++VH
Sbjct: 403 RAFSFRFPVNKNVVA--DGQWGCDEQNQSCNSLELQVKTPSFARRTLLWLVGR-QNKVVH 462

Query: 81  SSFTPN 140
           SSFTPN
Sbjct: 463 SSFTPN 465

Query: 141 200
           
Sbjct: 523 465

Query: 201 219
           
Sbjct: 583 465

BLAST of CU117108 vs. NCBI nr
Match: gi|970037907|ref|XP_015080289.1| (PREDICTED: RING-H2 finger protein ATL13 [Solanum pennellii])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 39/93 (41.94%), Postives = 48/93 (51.61%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRS---------------------------ENGMGMMDEENQRRNSL 80
           RAFSF FPAN+N P +                           EN +G  DEENQ  N L
Sbjct: 384 RAFSFRFPANQNIPVAAQPDDSGSAATKNGCRRTVSEIDLGTWENNVGC-DEENQCSNRL 443

Query: 81  EFVENRPSFVRRTLQWLMGKNNNRIVHSSFTPN 140
           E+    PSF RRTL WLMG+  N++VHSS++ N
Sbjct: 444 EYQPKTPSFARRTLSWLMGR-QNKVVHSSYSSN 474

Query: 141 200
           
Sbjct: 504 474

Query: 201 219
           
Sbjct: 564 474

BLAST of CU117108 vs. NCBI nr
Match: gi|224091879|ref|XP_002309383.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 8.5e-07
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3

Query: 21  RAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKNNNRIVH 80
           RAFSF FP N+N   +++ + M   ++   + LE  E  PSF RRTL WL+G+  N++VH
Sbjct: 400 RAFSFRFPVNKNVV-ADDDLKMRKGDSDSCHRLELQEKTPSFARRTLLWLVGR-QNKVVH 459

Query: 81  SSFTPN 140
           SSFTPN
Sbjct: 460 SSFTPN 463

Query: 141 200
           
Sbjct: 520 463

Query: 201 219
           
Sbjct: 580 463

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LH59_CUCSA9.1e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047810 PE=4 SV=1[more]
B9IM58_POPTR1.7e-0956.06Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0018s10760g PE=4 SV=2[more]
B9HBN5_POPTR2.7e-0748.48Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s19080g PE=4 SV=1[more]
M1DSC6_SOLTU5.9e-0743.48Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043193 PE=4 SV=1[more]
K4CBA7_SOLLC1.7e-0640.86Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449462741|ref|XP_004149099.1|2.9e-31100.00PREDICTED: RING-H2 finger protein ATL13 [Cucumis sativus][more]
gi|659069895|ref|XP_008452317.1|2.7e-2995.52PREDICTED: RING-H2 finger protein ATL13 [Cucumis melo][more]
gi|566215213|ref|XP_002324500.2|5.3e-0956.06zinc finger family protein [Populus trichocarpa][more]
gi|970037907|ref|XP_015080289.1|5.0e-0741.94PREDICTED: RING-H2 finger protein ATL13 [Solanum pennellii][more]
gi|224091879|ref|XP_002309383.1|8.5e-0748.48zinc finger family protein [Populus trichocarpa][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G047810Csa2G047810gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0141343G0141343EST
H0078732H0078732EST