MELO3C025820 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025820
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent Clp protease ATP-binding subunit ClpB
Locationchr4 : 18026191 .. 18026379 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATAACCTTAGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

mRNA sequence

GTTATAACCTTAGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Coding sequence (CDS)

GTTATAACCTTAGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Protein sequence

VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPTLARGQLQVFS*
Homology
[Close]
BLAST of MELO3C025820 vs. Swiss-Prot
Match: CLPC2_ORYSJ (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 328 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 387

[Close]
BLAST of MELO3C025820 vs. Swiss-Prot
Match: CLPC_PEA (Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 331 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAAN 390

[Close]
BLAST of MELO3C025820 vs. Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 392

[Close]
BLAST of MELO3C025820 vs. Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 331 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 390

[Close]
BLAST of MELO3C025820 vs. Swiss-Prot
Match: CLPC1_ORYSJ (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-21
Identity = 56/72 (77.78%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ+D             GAGAAEGAIDAAN
Sbjct: 327 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAAN 386

[Close]
BLAST of MELO3C025820 vs. TrEMBL
Match: W5GM60_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-20
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 325 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAAN 384

[Close]
BLAST of MELO3C025820 vs. TrEMBL
Match: A0A067EBP2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003094mg PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-20
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 256 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 315

[Close]
BLAST of MELO3C025820 vs. TrEMBL
Match: V4TAC3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100308631mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-20
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 160

[Close]
BLAST of MELO3C025820 vs. TrEMBL
Match: A0A067EK53_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003094mg PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-20
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 160

[Close]
BLAST of MELO3C025820 vs. TrEMBL
Match: M7Z383_TRIUA (ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic OS=Triticum urartu GN=TRIUR3_18196 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-20
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 303 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAAN 362

[Close]
BLAST of MELO3C025820 vs. TAIR10
Match: AT3G48870.1 (AT3G48870.1 Clp ATPase)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-22
Identity = 56/72 (77.78%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAAN
Sbjct: 354 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAAN 413

[Close]
BLAST of MELO3C025820 vs. TAIR10
Match: AT5G50920.1 (AT5G50920.1 CLPC homologue 1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-22
Identity = 56/72 (77.78%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAAN
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAAN 392

[Close]
BLAST of MELO3C025820 vs. TAIR10
Match: AT1G74310.1 (AT1G74310.1 heat shock protein 101)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-14
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAA 60
           +I+LDMG LVAG KYRGEFEERLK +++E++ ++              GAG  EG++DAA
Sbjct: 238 LISLDMGALVAGAKYRGEFEERLKSVLKEVEDAEGKVILFIDEIHLVLGAGKTEGSMDAA 297

[Close]
BLAST of MELO3C025820 vs. TAIR10
Match: AT5G15450.1 (AT5G15450.1 casein lytic proteinase B3)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAA 60
           +I+LDMG L+AG KYRGEFE+RLK +++E+  S+              GAGA  GA+DA 
Sbjct: 313 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTDSEGQIILFIDEIHTVVGAGATNGAMDAG 372

[Close]
BLAST of MELO3C025820 vs. TAIR10
Match: AT2G25140.1 (AT2G25140.1 casein lytic proteinase B4)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-13
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAA 60
           +I+LDMG L+AG K+RG+FEERLK +M+E+  S+              GAGA +GA+DA+
Sbjct: 318 LISLDMGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGAGAMDGAMDAS 377

[Close]
BLAST of MELO3C025820 vs. NCBI nr
Match: gi|848906978|ref|XP_012852691.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Erythranthe guttata])

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-20
Identity = 58/73 (79.45%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 329 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 388

[Close]
BLAST of MELO3C025820 vs. NCBI nr
Match: gi|641832252|gb|KDO51291.1| (hypothetical protein CISIN_1g003094mg [Citrus sinensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 160

[Close]
BLAST of MELO3C025820 vs. NCBI nr
Match: gi|474072491|gb|EMS54417.1| (ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic [Triticum urartu])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 303 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAAN 362

[Close]
BLAST of MELO3C025820 vs. NCBI nr
Match: gi|568863336|ref|XP_006485108.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic [Citrus sinensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 331 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 390

[Close]
BLAST of MELO3C025820 vs. NCBI nr
Match: gi|641832251|gb|KDO51290.1| (hypothetical protein CISIN_1g003094mg [Citrus sinensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1   VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAAN 60
           VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAAN
Sbjct: 256 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAAN 315

The following BLAST results are available for this feature:
BLAST of MELO3C025820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLPC2_ORYSJ1.1e-2179.17Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 ... [more]
CLPC_PEA1.1e-2179.17Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1[more]
CLPAA_SOLLC1.1e-2179.17ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ... [more]
CLPAB_SOLLC1.1e-2179.17ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ... [more]
CLPC1_ORYSJ2.3e-2177.78Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 ... [more]
BLAST of MELO3C025820 vs. TrEMBL
Match NameE-valueIdentityDescription
W5GM60_WHEAT9.0e-2078.08Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
A0A067EBP2_CITSI9.0e-2079.17Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003094mg PE=3 SV=1[more]
V4TAC3_9ROSI9.0e-2079.17Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100308631mg PE... [more]
A0A067EK53_CITSI9.0e-2079.17Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003094mg PE=3 SV=1[more]
M7Z383_TRIUA9.0e-2078.08ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloropla... [more]
BLAST of MELO3C025820 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48870.11.3e-2277.78 Clp ATPase[more]
AT5G50920.11.3e-2277.78 CLPC homologue 1[more]
AT1G74310.11.7e-1452.05 heat shock protein 101[more]
AT5G15450.11.5e-1349.32 casein lytic proteinase B3[more]
AT2G25140.13.3e-1349.32 casein lytic proteinase B4[more]
BLAST of MELO3C025820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848906978|ref|XP_012852691.1|5.8e-2079.45PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chl... [more]
gi|641832252|gb|KDO51291.1|1.3e-1979.17hypothetical protein CISIN_1g003094mg [Citrus sinensis][more]
gi|474072491|gb|EMS54417.1|1.3e-1978.08ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloropla... [more]
gi|568863336|ref|XP_006485108.1|1.3e-1979.17PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chl... [more]
gi|641832251|gb|KDO51290.1|1.3e-1979.17hypothetical protein CISIN_1g003094mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018368ClpA/B_CS1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008233 peptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025820T1MELO3C025820T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018368ClpA/B, conserved site 1PROSITEPS00870CLPAB_1coord: 44..56
scor
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 2..61
score: 2.
NoneNo IPR availableunknownCoilCoilcoord: 16..36
scor
NoneNo IPR availablePANTHERPTHR11638ATP-DEPENDENT CLP PROTEASEcoord: 1..59
score: 1.3
NoneNo IPR availablePANTHERPTHR11638:SF96SUBFAMILY NOT NAMEDcoord: 1..59
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025820Wax gourdmewgoB392
MELO3C025820Cucumber (Gy14) v1cgymeB560
MELO3C025820Cucurbita maxima (Rimu)cmameB230
MELO3C025820Cucumber (Chinese Long) v2cumeB220
MELO3C025820Watermelon (Charleston Gray)mewcgB342
MELO3C025820Watermelon (97103) v1mewmB363
MELO3C025820Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C025820Cucumber (Gy14) v2cgybmeB192