CU129122 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU129122
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionEarly nodulin-like protein 17
LocationChr3 : 32504921 .. 32505970 (-)
Sequence length249
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGATTGTCACTTTATAATAATGGTGAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGCGATACTGCTGGCGGCGGTGCCGGAAGTCTCGGCGACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTG
Library categoryESTs
fruit (8DPP) library1
BLAST of CU129122 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-12
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVG N  WN N+NYT WAQGKHFY  DWL+FV+DRNQ N+
Sbjct: 30  TVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNI 69

Query: 190 249
           
Sbjct: 90  69

BLAST of CU129122 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV
Sbjct: 36  TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 75

Query: 190 249
           
Sbjct: 96  75

BLAST of CU129122 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 1.3e+03
Identity = 19/39 (48.72%), Postives = 19/39 (48.72%), Query Frame = 3

Query: 33  VLRTRVGGSGXXXXXXXXXXXXXXXPEVSATVDCRWQHG 92
           VLRTRVGGSG               PEVSAT   RW  G
Sbjct: 3   VLRTRVGGSGLLVAVAAVVILLAAVPEVSAT---RWTVG 38

Query: 93  150
           
Sbjct: 63  38


HSP 2 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGN GW TNVNYT WAQGKHFY DDWLFFVYDRNQMN+
Sbjct: 39  TVGGNQGWTTNVNYTIWAQGKHFYKDDWLFFVYDRNQMNI 78

Query: 190 249
           
Sbjct: 99  78

BLAST of CU129122 vs. TrEMBL
Match: Q2HW94_MEDTR (Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 133 VGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 192
           VGG MGWNTN NYTTWA+GKHFY  DWLFFVYDRNQMNV
Sbjct: 40  VGGRMGWNTNFNYTTWAKGKHFYNGDWLFFVYDRNQMNV 78

Query: 193 250
           
Sbjct: 100 78

BLAST of CU129122 vs. TrEMBL
Match: A9PAA9_POPTR (Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.8e-13
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVG NMGW +NVNYT WAQGKHFY  DWLFFVYDRNQMN+
Sbjct: 35  TVGSNMGWTSNVNYTIWAQGKHFYNGDWLFFVYDRNQMNI 74

Query: 190 249
           
Sbjct: 95  74

BLAST of CU129122 vs. TrEMBL
Match: D7SXH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01320 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGN GW+TNVNYT WA+ KHFY  DWLFFVYDRNQMNV
Sbjct: 17  TVGGNQGWSTNVNYTVWAKDKHFYNGDWLFFVYDRNQMNV 56

Query: 190 249
           
Sbjct: 77  56

BLAST of CU129122 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV
Sbjct: 36  TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 75

Query: 190 249
           
Sbjct: 96  75

BLAST of CU129122 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGNMGW TNVNY+TWAQGKHFYYDDWLFFVYDRNQMNV
Sbjct: 37  TVGGNMGWTTNVNYSTWAQGKHFYYDDWLFFVYDRNQMNV 76

Query: 190 249
           
Sbjct: 97  76

BLAST of CU129122 vs. NCBI nr
Match: gi|703073526|ref|XP_010089568.1| (Lamin-like protein [Morus notabilis])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1

Query: 130 TVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 189
           TVGGN GW TNVNYT WAQGKHFY DDWLFFVYDRNQMN+
Sbjct: 39  TVGGNQGWTTNVNYTIWAQGKHFYKDDWLFFVYDRNQMNI 78

Query: 190 249
           
Sbjct: 99  78

BLAST of CU129122 vs. NCBI nr
Match: gi|357496611|ref|XP_003618594.1| (blue copper-like protein [Medicago truncatula])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 133 VGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 192
           VGG MGWNTN NYTTWA+GKHFY  DWLFFVYDRNQMNV
Sbjct: 40  VGGRMGWNTNFNYTTWAKGKHFYNGDWLFFVYDRNQMNV 78

Query: 193 250
           
Sbjct: 100 78

BLAST of CU129122 vs. NCBI nr
Match: gi|502091076|ref|XP_004489434.1| (PREDICTED: lamin-like protein [Cicer arietinum])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 133 VGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNV 192
           VGG MGWNTN NYTTWA+GKHFY  DWLFFVYDRNQMNV
Sbjct: 40  VGGRMGWNTNFNYTTWAKGKHFYNGDWLFFVYDRNQMNV 78

Query: 193 250
           
Sbjct: 100 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LAML_ARATH5.8e-1270.00Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LC11_CUCSA1.4e-17100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1[more]
A0A0A0LC11_CUCSA1.3e+0348.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1[more]
Q2HW94_MEDTR2.2e-1387.18Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1[more]
A9PAA9_POPTR4.8e-1382.50Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POP... [more]
D7SXH0_VITVI1.1e-1282.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g01320 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|449437808|ref|XP_004136682.1|7.9e-17100.00PREDICTED: lamin-like protein [Cucumis sativus][more]
gi|659085323|ref|XP_008443359.1|1.1e-1595.00PREDICTED: lamin-like protein [Cucumis melo][more]
gi|703073526|ref|XP_010089568.1|1.1e-1387.50Lamin-like protein [Morus notabilis][more]
gi|357496611|ref|XP_003618594.1|1.2e-1287.18blue copper-like protein [Medicago truncatula][more]
gi|502091076|ref|XP_004489434.1|1.2e-1287.18PREDICTED: lamin-like protein [Cicer arietinum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G824220Csa3G824220gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MT2IBFKNP3UI02MT2IBEST