CU163298 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU163298
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5853681 .. 5853810 (+)
Sequence length135
The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAGGCGATAACGGTGGTCGGAGACTGTTGTAAATCTTGGTTTGAGAACAGAAACCGCTCCGAGAATCAACAGAATGGGTAGCCATTGATGTGAAATTCAGATTTGTGAAGGAAAATATGAATGAAATTCGTC
BLAST of CU163298 vs. TrEMBL
Match: A0A0A0LWL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050300 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -3

Query: 8  MATHSVDSRSGFCSQTKIYNSLRPPLS 67
          MATHSVDSRSGFCSQTKIYNSLRPPLS
Sbjct: 1  MATHSVDSRSGFCSQTKIYNSLRPPLS 27

Query: 68 89
          
Sbjct: 61 27

BLAST of CU163298 vs. TrEMBL
Match: A0A0A0LR49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050290 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3

Query: 8  MATHSVDSRSGFCSQTKIYNSLRPPLS 67
          MATHSVD RSGFCSQTKIYNSLRPPLS
Sbjct: 1  MATHSVDPRSGFCSQTKIYNSLRPPLS 27

Query: 68 89
          
Sbjct: 61 27

BLAST of CU163298 vs. TrEMBL
Match: E5GBV5_CUCME (4-coumarate-CoA ligase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3

Query: 8  MATHSVDSRSGFCSQTKIYNSLRPPLS 67
          MATHSVDSRSGFCSQTKIY SLRPPLS
Sbjct: 1  MATHSVDSRSGFCSQTKIYKSLRPPLS 27

Query: 68 89
          
Sbjct: 61 27

BLAST of CU163298 vs. TrEMBL
Match: E5GBV5_CUCME (4-coumarate-CoA ligase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.1e-03
Identity = 25/45 (55.56%), Postives = 28/45 (62.22%), Query Frame = -3

Query: 8   SFTNLNFTSMAT---------HSVDSRSGFCSQTKIYNSLRPPLS 67
           S T   FTSMA          HS+D RSGFC  TKI++SLRPPLS
Sbjct: 478 SITFFEFTSMAARNSNFNAAPHSIDLRSGFCPLTKIFHSLRPPLS 522

Query: 68  116
           
Sbjct: 538 522

BLAST of CU163298 vs. NCBI nr
Match: gi|778658041|ref|XP_004152591.2| (PREDICTED: 4-coumarate--CoA ligase-like 9 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -3

Query: 8  MATHSVDSRSGFCSQTKIYNSLRPPLS 67
          MATHSVDSRSGFCSQTKIYNSLRPPLS
Sbjct: 1  MATHSVDSRSGFCSQTKIYNSLRPPLS 27

Query: 68 89
          
Sbjct: 61 27

BLAST of CU163298 vs. NCBI nr
Match: gi|778658045|ref|XP_011652012.1| (PREDICTED: 4-coumarate--CoA ligase-like 9 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3

Query: 8  MATHSVDSRSGFCSQTKIYNSLRPPLS 67
          MATHSVD RSGFCSQTKIYNSLRPPLS
Sbjct: 1  MATHSVDPRSGFCSQTKIYNSLRPPLS 27

Query: 68 89
          
Sbjct: 61 27

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWL5_CUCSA1.8e-06100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050300 PE=4 SV=1[more]
A0A0A0LR49_CUCSA6.7e-0696.30Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050290 PE=4 SV=1[more]
E5GBV5_CUCME8.8e-0696.304-coumarate-CoA ligase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBV5_CUCME9.1e-0355.564-coumarate-CoA ligase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778658041|ref|XP_004152591.2|2.5e-06100.00PREDICTED: 4-coumarate--CoA ligase-like 9 [Cucumis sativus][more]
gi|778658045|ref|XP_011652012.1|9.6e-0696.30PREDICTED: 4-coumarate--CoA ligase-like 9 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G050300Csa1G050300gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0071189H0071189EST