MELO3C016171 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016171
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Exu regulon transcriptional regulator
Location	chr7 : 20137704 .. 20138219 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

mRNA sequence

ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

Coding sequence (CDS)

ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

Protein sequence

MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKERSRNEALIKKLEADGQVTMIKGSVVWVTTKGKEIASNYPPEEEAYFPHSVIPAIKMVSSSYKTIDDDKVQKVGVREIKNIQHQLNYTNKVLSTISSRKNRESRPSDEEQKP*

Homology

[Close]

BLAST of MELO3C016171 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 1   MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKE 60
           MERR EP +NQINVIS       F+E+Y KY++ W  AP+ET+KPFL M  F+       
Sbjct: 332 MERRSEPAFNQINVISDDRER--FREHYIKYVETWTKAPAETKKPFLYMSAFV------- 391

Query: 61  RSRNEALIKKLEADGQVTMIKGS 84
              NEA     +    V MIK +
Sbjct: 392 --ENEAEASAKQEAKMVNMIKNN 403

[Close]

BLAST of MELO3C016171 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 1   MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKE 60
           MERR EP +NQINVIS       F+E+Y KY++ W  AP+ET+KPFL M  F+       
Sbjct: 332 MERRSEPAFNQINVISDDRER--FREHYIKYVETWTKAPAETKKPFLYMSAFV------- 391

Query: 61  RSRNEALIKKLEADGQVTMIKGS 84
              NEA     +    V MIK +
Sbjct: 392 --ENEAEASAKQEAKMVNMIKNN 403

The following BLAST results are available for this feature:

BLAST of MELO3C016171 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M024_CUCSA	8.2e-07	43.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1	[more]

BLAST of MELO3C016171 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210425\|gb\|KGN65521.1\|	1.2e-06	43.37	hypothetical protein Csa_1G434190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016171T1	MELO3C016171T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016171	Bottle gourd (USVL1VR-Ls)	lsimeB455
MELO3C016171	Cucumber (Gy14) v2	cgybmeB271
MELO3C016171	Silver-seed gourd	carmeB0042
MELO3C016171	Silver-seed gourd	carmeB0652
MELO3C016171	Cucumber (Chinese Long) v3	cucmeB306
MELO3C016171	Cucumber (Chinese Long) v3	cucmeB317
MELO3C016171	Watermelon (97103) v2	mewmbB491
MELO3C016171	Wax gourd	mewgoB577
MELO3C016171	Cucumber (Gy14) v1	cgymeB323
MELO3C016171	Cucurbita maxima (Rimu)	cmameB301
MELO3C016171	Cucurbita maxima (Rimu)	cmameB701
MELO3C016171	Cucurbita moschata (Rifu)	cmomeB294
MELO3C016171	Cucurbita moschata (Rifu)	cmomeB693
MELO3C016171	Wild cucumber (PI 183967)	cpimeB300
MELO3C016171	Wild cucumber (PI 183967)	cpimeB312
MELO3C016171	Cucumber (Chinese Long) v2	cumeB304
MELO3C016171	Cucumber (Chinese Long) v2	cumeB314
MELO3C016171	Watermelon (Charleston Gray)	mewcgB485
MELO3C016171	Watermelon (97103) v1	mewmB508
MELO3C016171	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C016171	Cucurbita pepo (Zucchini)	cpemeB423