MELO3C016171T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C016171T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionExu regulon transcriptional regulator
Locationchr7 : 20137704 .. 20138219 (+)
Sequence length516
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

mRNA sequence

ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

Coding sequence (CDS)

ATGGAAAGGAGAATTGAACCAGTCTATAATCAAATCAACGTCATCTCTAGCCACAACAACGATGCATGTTTTCAAGAGTATTACAGCAAGTACCTGGACATGTGGCTTGTTGCTCCCTCTGAGACGAGGAAACCCTTTCTCCCTATGCCAGACTTCATCGCAAGAATGAGGCAAAAGGAGCGATCCAGAAATGAAGCTCTCATAAAAAAACTCGAAGCGGATGGCCAAGTCACAATGATCAAAGGATCAGTTGTTTGGGTCACAACAAAGGGTAAAGAAATAGCTTCAAACTATCCTCCCGAAGAAGAAGCTTATTTCCCTCATTCCGTAATTCCTGCCATCAAAATGGTCTCTTCTTCGTACAAGACCATCGATGACGATAAGGTTCAAAAGGTCGGAGTTCGCGAAATCAAGAATATCCAACATCAACTTAATTATACCAACAAAGTCCTTTCTACAATCTCCAGTAGAAAGAATAGAGAATCCAGGCCTTCAGATGAAGAACAAAAACCCTGA

Protein sequence

MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKERSRNEALIKKLEADGQVTMIKGSVVWVTTKGKEIASNYPPEEEAYFPHSVIPAIKMVSSSYKTIDDDKVQKVGVREIKNIQHQLNYTNKVLSTISSRKNRESRPSDEEQKP*
Homology
[Close]
BLAST of MELO3C016171T1 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 1   MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKE 60
           MERR EP +NQINVIS       F+E+Y KY++ W  AP+ET+KPFL M  F+       
Sbjct: 332 MERRSEPAFNQINVISDDRER--FREHYIKYVETWTKAPAETKKPFLYMSAFV------- 391

Query: 61  RSRNEALIKKLEADGQVTMIKGS 84
              NEA     +    V MIK +
Sbjct: 392 --ENEAEASAKQEAKMVNMIKNN 403

[Close]
BLAST of MELO3C016171T1 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 1   MERRIEPVYNQINVISSHNNDACFQEYYSKYLDMWLVAPSETRKPFLPMPDFIARMRQKE 60
           MERR EP +NQINVIS       F+E+Y KY++ W  AP+ET+KPFL M  F+       
Sbjct: 332 MERRSEPAFNQINVISDDRER--FREHYIKYVETWTKAPAETKKPFLYMSAFV------- 391

Query: 61  RSRNEALIKKLEADGQVTMIKGS 84
              NEA     +    V MIK +
Sbjct: 392 --ENEAEASAKQEAKMVNMIKNN 403

The following BLAST results are available for this feature:
BLAST of MELO3C016171T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M024_CUCSA8.2e-0743.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1[more]
BLAST of MELO3C016171T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210425|gb|KGN65521.1|1.2e-0643.37hypothetical protein Csa_1G434190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016171MELO3C016171gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016171T1MELO3C016171T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016171T1.cds1MELO3C016171T1.cds1CDS