MELO3C016855 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016855
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionarabinogalactan protein 15
Locationchr7 : 1579783 .. 1580394 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTTTTCTCTATTATATAAACACTCCCACCCTTCTCTTTCTCCGTTGCCAAACCTTCCATTCCTTTTCCTCTCTCAATATTCTTTCTTTTCTTACAAAACCCTAATCTTTTTCTCTTTTTTGGAAGCAATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGAATGATACTTTGTACGCGTTTTGTGATTTTAGCAATGGATTCGTTTACTGATGATGCTCGATTACATTATGGAGGGTTTTTATTGACTATATTATTGAGTGTATAGGACATGGTTTTCGACGATGTCAAGAATTAGGTTTTATTAGAGATTGGTGGTTTGTATTCATGTATTATTATTATTCATTGTGTGTTATCTCATTATTAATATTGTTCCTTTTATATATCCACATTATTTGAGTAAATAAATTATTTCAGTTTTCTACTCTCTGTCTCGTCAAATTGAT

mRNA sequence

TCCTCTTTTCTCTATTATATAAACACTCCCACCCTTCTCTTTCTCCGTTGCCAAACCTTCCATTCCTTTTCCTCTCTCAATATTCTTTCTTTTCTTACAAAACCCTAATCTTTTTCTCTTTTTTGGAAGCAATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGAATGATACTTTGTACGCGTTTTGTGATTTTAGCAATGGATTCGTTTACTGATGATGCTCGATTACATTATGGAGGGTTTTTATTGACTATATTATTGAGTGTATAGGACATGGTTTTCGACGATGTCAAGAATTAGGTTTTATTAGAGATTGGTGGTTTGTATTCATGTATTATTATTATTCATTGTGTGTTATCTCATTATTAATATTGTTCCTTTTATATATCCACATTATTTGAGTAAATAAATTATTTCAGTTTTCTACTCTCTGTCTCGTCAAATTGAT

Coding sequence (CDS)

ATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGA

Protein sequence

MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFGSALKA*
Homology
[Close]
BLAST of MELO3C016855 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-21
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MAAVS VSFMALVA+LFA+ S+A+AQSAESPAP PASPANSVVPSLS ACVGAF+ALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of MELO3C016855 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-10
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
           MAA+S VS +AL+AL+FA+ S+A   + E+PAP+PASPA S+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of MELO3C016855 vs. TrEMBL
Match: A0A067KGJ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07699 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MA +S  S +A++ALL A+ S   A    +PAPAPAS A ++ PS++ ACV +  ALLFG
Sbjct: 1  MAFLSKASLIAVMALLLAVLSANAAAPESAPAPAPASGAGAISPSVASACVASVAALLFG 60

Query: 61 SALK 65
            LK
Sbjct: 61 YGLK 64

[Close]
BLAST of MELO3C016855 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-21
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MAAVS VSFMALVA+LFA+ S+A+AQSAESPAP PASPANSVVPSLS ACVGAF+ALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of MELO3C016855 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-10
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
           MAA+S VS +AL+AL+FA+ S+A   + E+PAP+PASPA S+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of MELO3C016855 vs. NCBI nr
Match: gi|643724927|gb|KDP34128.1| (hypothetical protein JCGZ_07699 [Jatropha curcas])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MA +S  S +A++ALL A+ S   A    +PAPAPAS A ++ PS++ ACV +  ALLFG
Sbjct: 1  MAFLSKASLIAVMALLLAVLSANAAAPESAPAPAPASGAGAISPSVASACVASVAALLFG 60

Query: 61 SALK 65
            LK
Sbjct: 61 YGLK 64

The following BLAST results are available for this feature:
BLAST of MELO3C016855 vs. TrEMBL
Match NameE-valueIdentityDescription
Q96504_CUCSA2.2e-2186.15CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU1_CUCSA4.0e-1056.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
A0A067KGJ5_JATCU1.2e-0648.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07699 PE=4 SV=1[more]
BLAST of MELO3C016855 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1669529|dbj|BAA08394.1|3.2e-2186.15CRG16 [Cucumis sativus][more]
gi|700207284|gb|KGN62403.1|5.7e-1056.25hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|643724927|gb|KDP34128.1|1.7e-0648.44hypothetical protein JCGZ_07699 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU47616melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016855T1MELO3C016855T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU47616MU47616transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016855Carg21745Silver-seed gourdcarmeB0325
MELO3C016855CsaV3_4G035470Cucumber (Chinese Long) v3cucmeB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016855Cucurbita pepo (Zucchini)cpemeB107
MELO3C016855Cucurbita pepo (Zucchini)cpemeB346
MELO3C016855Cucurbita pepo (Zucchini)cpemeB538
MELO3C016855Cucurbita pepo (Zucchini)cpemeB642
MELO3C016855Cucurbita pepo (Zucchini)cpemeB734
MELO3C016855Bottle gourd (USVL1VR-Ls)lsimeB314
MELO3C016855Bottle gourd (USVL1VR-Ls)lsimeB423
MELO3C016855Bottle gourd (USVL1VR-Ls)lsimeB488
MELO3C016855Cucumber (Gy14) v2cgybmeB073
MELO3C016855Cucumber (Gy14) v2cgybmeB128
MELO3C016855Cucumber (Gy14) v2cgybmeB270
MELO3C016855Cucumber (Gy14) v2cgybmeB500
MELO3C016855Silver-seed gourdcarmeB0098
MELO3C016855Silver-seed gourdcarmeB0187
MELO3C016855Silver-seed gourdcarmeB0767
MELO3C016855Cucumber (Chinese Long) v3cucmeB087
MELO3C016855Cucumber (Chinese Long) v3cucmeB150
MELO3C016855Cucumber (Chinese Long) v3cucmeB583
MELO3C016855Watermelon (97103) v2mewmbB486
MELO3C016855Watermelon (97103) v2mewmbB506
MELO3C016855Watermelon (97103) v2mewmbB512
MELO3C016855Wax gourdmewgoB588
MELO3C016855Wax gourdmewgoB595
MELO3C016855Wax gourdmewgoB598
MELO3C016855Wax gourdmewgoB611
MELO3C016855Melon (DHL92) v3.5.1memeB097
MELO3C016855Melon (DHL92) v3.5.1memeB115
MELO3C016855Melon (DHL92) v3.5.1memeB128
MELO3C016855Cucumber (Gy14) v1cgymeB570
MELO3C016855Cucumber (Gy14) v1cgymeB584
MELO3C016855Cucumber (Gy14) v1cgymeB647
MELO3C016855Cucurbita maxima (Rimu)cmameB040
MELO3C016855Cucurbita maxima (Rimu)cmameB079
MELO3C016855Cucurbita maxima (Rimu)cmameB142
MELO3C016855Cucurbita maxima (Rimu)cmameB182
MELO3C016855Cucurbita maxima (Rimu)cmameB432
MELO3C016855Cucurbita maxima (Rimu)cmameB741
MELO3C016855Cucurbita moschata (Rifu)cmomeB029
MELO3C016855Cucurbita moschata (Rifu)cmomeB072
MELO3C016855Cucurbita moschata (Rifu)cmomeB131
MELO3C016855Cucurbita moschata (Rifu)cmomeB171
MELO3C016855Cucurbita moschata (Rifu)cmomeB435
MELO3C016855Cucurbita moschata (Rifu)cmomeB729
MELO3C016855Wild cucumber (PI 183967)cpimeB082
MELO3C016855Wild cucumber (PI 183967)cpimeB148
MELO3C016855Wild cucumber (PI 183967)cpimeB311
MELO3C016855Wild cucumber (PI 183967)cpimeB571
MELO3C016855Cucumber (Chinese Long) v2cumeB079
MELO3C016855Cucumber (Chinese Long) v2cumeB149
MELO3C016855Cucumber (Chinese Long) v2cumeB313
MELO3C016855Cucumber (Chinese Long) v2cumeB559
MELO3C016855Watermelon (Charleston Gray)mewcgB448
MELO3C016855Watermelon (Charleston Gray)mewcgB473
MELO3C016855Watermelon (Charleston Gray)mewcgB481
MELO3C016855Watermelon (Charleston Gray)mewcgB502
MELO3C016855Watermelon (97103) v1mewmB493
MELO3C016855Watermelon (97103) v1mewmB501
MELO3C016855Watermelon (97103) v1mewmB504
MELO3C016855Watermelon (97103) v1mewmB529