MELO3C016855T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C016855T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionarabinogalactan protein 15
Locationchr7 : 1579783 .. 1580394 (-)
Sequence length612
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTTTTCTCTATTATATAAACACTCCCACCCTTCTCTTTCTCCGTTGCCAAACCTTCCATTCCTTTTCCTCTCTCAATATTCTTTCTTTTCTTACAAAACCCTAATCTTTTTCTCTTTTTTGGAAGCAATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGAATGATACTTTGTACGCGTTTTGTGATTTTAGCAATGGATTCGTTTACTGATGATGCTCGATTACATTATGGAGGGTTTTTATTGACTATATTATTGAGTGTATAGGACATGGTTTTCGACGATGTCAAGAATTAGGTTTTATTAGAGATTGGTGGTTTGTATTCATGTATTATTATTATTCATTGTGTGTTATCTCATTATTAATATTGTTCCTTTTATATATCCACATTATTTGAGTAAATAAATTATTTCAGTTTTCTACTCTCTGTCTCGTCAAATTGAT

mRNA sequence

TCCTCTTTTCTCTATTATATAAACACTCCCACCCTTCTCTTTCTCCGTTGCCAAACCTTCCATTCCTTTTCCTCTCTCAATATTCTTTCTTTTCTTACAAAACCCTAATCTTTTTCTCTTTTTTGGAAGCAATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGAATGATACTTTGTACGCGTTTTGTGATTTTAGCAATGGATTCGTTTACTGATGATGCTCGATTACATTATGGAGGGTTTTTATTGACTATATTATTGAGTGTATAGGACATGGTTTTCGACGATGTCAAGAATTAGGTTTTATTAGAGATTGGTGGTTTGTATTCATGTATTATTATTATTCATTGTGTGTTATCTCATTATTAATATTGTTCCTTTTATATATCCACATTATTTGAGTAAATAAATTATTTCAGTTTTCTACTCTCTGTCTCGTCAAATTGAT

Coding sequence (CDS)

ATGGCCGCCGTCTCTAATGTTTCTTTCATGGCTCTTGTTGCCCTCTTGTTCGCCATCTTCTCCATTGCGCTCGCACAATCTGCAGAGTCTCCTGCTCCTGCTCCGGCTTCTCCGGCTAACTCTGTTGTTCCGTCCTTGAGTCTTGCTTGTGTTGGTGCTTTCGTTGCTCTCCTCTTTGGATCTGCACTCAAGGCTTGA

Protein sequence

MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFGSALKA*
Homology
[Close]
BLAST of MELO3C016855T1 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-21
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MAAVS VSFMALVA+LFA+ S+A+AQSAESPAP PASPANSVVPSLS ACVGAF+ALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of MELO3C016855T1 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-10
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
           MAA+S VS +AL+AL+FA+ S+A   + E+PAP+PASPA S+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of MELO3C016855T1 vs. TrEMBL
Match: A0A067KGJ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07699 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MA +S  S +A++ALL A+ S   A    +PAPAPAS A ++ PS++ ACV +  ALLFG
Sbjct: 1  MAFLSKASLIAVMALLLAVLSANAAAPESAPAPAPASGAGAISPSVASACVASVAALLFG 60

Query: 61 SALK 65
            LK
Sbjct: 61 YGLK 64

[Close]
BLAST of MELO3C016855T1 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-21
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MAAVS VSFMALVA+LFA+ S+A+AQSAESPAP PASPANSVVPSLS ACVGAF+ALLFG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 SALKA 66
          SALKA
Sbjct: 61 SALKA 65

[Close]
BLAST of MELO3C016855T1 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-10
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1   MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
           MAA+S VS +AL+AL+FA+ S+A   + E+PAP+PASPA S+ PS   AC+ AF+AL FG
Sbjct: 67  MAALSKVSLLALIALIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 126

Query: 61  SALK 65
           S L+
Sbjct: 127 STLR 127

[Close]
BLAST of MELO3C016855T1 vs. NCBI nr
Match: gi|643724927|gb|KDP34128.1| (hypothetical protein JCGZ_07699 [Jatropha curcas])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 1  MAAVSNVSFMALVALLFAIFSIALAQSAESPAPAPASPANSVVPSLSLACVGAFVALLFG 60
          MA +S  S +A++ALL A+ S   A    +PAPAPAS A ++ PS++ ACV +  ALLFG
Sbjct: 1  MAFLSKASLIAVMALLLAVLSANAAAPESAPAPAPASGAGAISPSVASACVASVAALLFG 60

Query: 61 SALK 65
            LK
Sbjct: 61 YGLK 64

The following BLAST results are available for this feature:
BLAST of MELO3C016855T1 vs. TrEMBL
Match NameE-valueIdentityDescription
Q96504_CUCSA2.2e-2186.15CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A0A0LKU1_CUCSA4.0e-1056.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
A0A067KGJ5_JATCU1.2e-0648.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07699 PE=4 SV=1[more]
BLAST of MELO3C016855T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1669529|dbj|BAA08394.1|3.2e-2186.15CRG16 [Cucumis sativus][more]
gi|700207284|gb|KGN62403.1|5.7e-1056.25hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|643724927|gb|KDP34128.1|1.7e-0648.44hypothetical protein JCGZ_07699 [Jatropha curcas][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016855MELO3C016855gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016855T1MELO3C016855T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016855T1.cds1MELO3C016855T1.cds1CDS