MELO3C025207 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025207
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr8 : 26394645 .. 26394950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

mRNA sequence

ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

Coding sequence (CDS)

ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

Protein sequence

MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK
Homology
[Close]
BLAST of MELO3C025207 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.0e-38
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENP 60
           MTSQGNTSKALSDIGKRPNT S SREIQS E   PFEVAKNIWEQISKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  AIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK 103
           AID+H S S+ S+EE P PNIMSVMVT+VDTSE RM ELEKK
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKK 102

[Close]
BLAST of MELO3C025207 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENP 60
           MTSQGNTSKALSDIGKRPNT S SREIQS E   PFEVAKNIWEQISKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  AIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK 103
           AID+H S S+ S+EE P PNIMSVMVT+VDTSE RM ELEKK
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKK 102

The following BLAST results are available for this feature:
BLAST of MELO3C025207 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME9.0e-3882.35Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C025207 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|1.3e-3782.35ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025207T1MELO3C025207T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 82..102
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025207Silver-seed gourdcarmeB0025
MELO3C025207Silver-seed gourdcarmeB0168
MELO3C025207Silver-seed gourdcarmeB0283
MELO3C025207Silver-seed gourdcarmeB0627
MELO3C025207Cucumber (Chinese Long) v3cucmeB260
MELO3C025207Cucumber (Chinese Long) v3cucmeB335
MELO3C025207Cucumber (Chinese Long) v3cucmeB525
MELO3C025207Watermelon (97103) v2mewmbB521
MELO3C025207Watermelon (97103) v2mewmbB522
MELO3C025207Watermelon (97103) v2mewmbB533
MELO3C025207Wax gourdmewgoB616
MELO3C025207Wax gourdmewgoB626
MELO3C025207Wax gourdmewgoB652
MELO3C025207Melon (DHL92) v3.5.1memeB133
MELO3C025207Melon (DHL92) v3.5.1memeB146
MELO3C025207Cucumber (Gy14) v1cgymeB210
MELO3C025207Cucumber (Gy14) v1cgymeB319
MELO3C025207Cucurbita maxima (Rimu)cmameB610
MELO3C025207Cucurbita maxima (Rimu)cmameB709
MELO3C025207Cucurbita maxima (Rimu)cmameB775
MELO3C025207Cucurbita maxima (Rimu)cmameB801
MELO3C025207Cucurbita moschata (Rifu)cmomeB599
MELO3C025207Cucurbita moschata (Rifu)cmomeB701
MELO3C025207Cucurbita moschata (Rifu)cmomeB762
MELO3C025207Cucurbita moschata (Rifu)cmomeB785
MELO3C025207Wild cucumber (PI 183967)cpimeB254
MELO3C025207Wild cucumber (PI 183967)cpimeB330
MELO3C025207Wild cucumber (PI 183967)cpimeB517
MELO3C025207Cucumber (Chinese Long) v2cumeB267
MELO3C025207Watermelon (Charleston Gray)mewcgB510
MELO3C025207Watermelon (Charleston Gray)mewcgB511
MELO3C025207Watermelon (Charleston Gray)mewcgB525
MELO3C025207Watermelon (97103) v1mewmB556
MELO3C025207Watermelon (97103) v1mewmB575
MELO3C025207Cucurbita pepo (Zucchini)cpemeB070
MELO3C025207Cucurbita pepo (Zucchini)cpemeB459
MELO3C025207Cucurbita pepo (Zucchini)cpemeB821
MELO3C025207Bottle gourd (USVL1VR-Ls)lsimeB157
MELO3C025207Bottle gourd (USVL1VR-Ls)lsimeB277
MELO3C025207Bottle gourd (USVL1VR-Ls)lsimeB276
MELO3C025207Cucumber (Gy14) v2cgybmeB222
MELO3C025207Cucumber (Gy14) v2cgybmeB284
MELO3C025207Cucumber (Gy14) v2cgybmeB450