MELO3C025207T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025207T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ty3-gypsy retrotransposon protein
Location	chr8 : 26394645 .. 26394950 (+)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

mRNA sequence

ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

Coding sequence (CDS)

ATGACATCTCAAGGCAACACTTCTAAAGCTCTCAGCGACATCGGCAAGCGACCAAACACTCATAGCCGCTCAAGAGAGATTCAATCATTTGAAGTTACGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGAGCAAATCTCCAAGCCACCAAAAGGTGGAATTGTAATCAAAGAAAATCCTGCGATTGACGAACACTACTCGTCCTCTCAACCCTCAAGTGAGGAAATGCCTCACCCAAATATAATGTCGGTTATGGTAACTAACGTGGATACAAGTGAAAATAGAATGGCAGAGCTTGAAAAGAAG

Protein sequence

MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK

Homology

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BLAST of MELO3C025207T1 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.0e-38
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 1   MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENP 60
           MTSQGNTSKALSDIGKRPNT S SREIQS E   PFEVAKNIWEQISKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  AIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK 103
           AID+H S S+ S+EE P PNIMSVMVT+VDTSE RM ELEKK
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKK 102

[Close]

BLAST of MELO3C025207T1 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 1   MTSQGNTSKALSDIGKRPNTHSRSREIQSFEVTPPFEVAKNIWEQISKPPKGGIVIKENP 60
           MTSQGNTSKALSDIGKRPNT S SREIQS E   PFEVAKNIWEQISKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  AIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSENRMAELEKK 103
           AID+H S S+ S+EE P PNIMSVMVT+VDTSE RM ELEKK
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKK 102

The following BLAST results are available for this feature:

BLAST of MELO3C025207T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB0_CUCME	9.0e-38	82.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C025207T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135887\|gb\|ADN33752.1\|	1.3e-37	82.35	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025207	MELO3C025207	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025207T1	MELO3C025207T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025207T1.cds1	MELO3C025207T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..102 scor