WMU12108 (transcribed_cluster) Watermelon (97103) v1
The following sequences are available for this feature:
AAGCAAGTAGGTAATCAAACGCAAGAAGTGGCCATTACGACCGGGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGCTTCAAGTGTAAGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAAATTACATTTTCCCAAAAATCCCAAGTGAGTTGTGCTTGCTGTTCAACCTCTGGCACCTCGACAATGGCGTCTTCATGTTGCCAATGTTCGGAATGTTTAGCTTCAATTTTTGTGTAAGTGTCCTACTAGGTTTCTTCTCCATATATTATCAGAAAGTTATATGACTTCTGCATAGAACATTTATTCAGCAATAGTGTCGGTTTTAAACTCTTCTTTTTTGTGCCTTCACGGCCTACTGTATATTATATTGGCTTCACTTGACATTGTATCGTTTTTTAATTTCGTGCATTGTTCTCAATTAACATGGAGTT
BLAST of WMU12108 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 85.1 bits (209), Expect = 4.8e-17 Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
HSP 2 Score: 30.4 bits (67), Expect = 1.4e+00 Identity = 12/13 (92.31%), Postives = 11/13 (84.62%), Query Frame = 2
BLAST of WMU12108 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07 Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
BLAST of WMU12108 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07 Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1
BLAST of WMU12108 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 52.4 bits (124), Expect = 3.4e-07 Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1
BLAST of WMU12108 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein) HSP 1 Score: 51.6 bits (122), Expect = 5.8e-07 Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
BLAST of WMU12108 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17 Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1
BLAST of WMU12108 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1) HSP 1 Score: 36.2 bits (82), Expect = 5.0e+01 Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 2
HSP 2 Score: 90.5 bits (223), Expect = 2.2e-15 Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of WMU12108 vs. TrEMBL
Match: D7T832_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01150 PE=4 SV=1) HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02 Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2
HSP 2 Score: 87.8 bits (216), Expect = 1.5e-14 Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
BLAST of WMU12108 vs. TrEMBL
Match: A0A0L9VA60_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g060000 PE=4 SV=1) HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02 Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2
HSP 2 Score: 87.8 bits (216), Expect = 1.5e-14 Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
BLAST of WMU12108 vs. TrEMBL
Match: A0A0S3S6Y0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G213500 PE=4 SV=1) HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02 Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2
HSP 2 Score: 87.4 bits (215), Expect = 1.9e-14 Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of WMU12108 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17 Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1
BLAST of WMU12108 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17 Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1
BLAST of WMU12108 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]) HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16 Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1
BLAST of WMU12108 vs. NCBI nr
Match: gi|225460865|ref|XP_002277738.1| (PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera]) HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15 Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of WMU12108 vs. NCBI nr
Match: gi|1000942966|ref|XP_015582122.1| (PREDICTED: upstream activation factor subunit UAF30 isoform X1 [Ricinus communis]) HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14 Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1
The following BLAST results are available for this feature:
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
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