MELO3C013165T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013165T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLong-chain fatty alcohol dehydrogenase family protein
Locationchr1 : 12831375 .. 12831833 (+)
Sequence length459
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

mRNA sequence

ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

Coding sequence (CDS)

ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

Protein sequence

MDGSIFADKSTRYVHLMFLPFLVQRRRPLVQEPDQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMSTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSMDFGQQYYDLGSYPSSSYMHGHGRGRGEYNEYLYYEVPAAVPEQSDKQQQQENAA
Homology
[Close]
BLAST of MELO3C013165T1 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 121/144 (84.03%), Postives = 129/144 (89.58%), Query Frame = 1 

Query: 14  VHLMF----LPFLVQRRRPLVQEPDQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMST 73
           +H M+    +P  VQRRRPLVQE DQLEEVDQH EE PPMTQTQ QSEH+YVSPVMMM T
Sbjct: 80  IHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPT 139

Query: 74  FGTTYYDSGVGQSSDFGRGYYNSKAGQSSMDFGQQYYDLGSYPSSSYMHGHGRGRGEYNE 133
           FG TYYDSGVGQSSDFGRGYYNS+AGQSS DFGQQYYDLGS PSSSYMHGHGRGRGE+NE
Sbjct: 140 FGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 199

Query: 134 YLYYEVPAAVPEQSDKQQQQENAA 154
           YLYY+VPAAVPEQSD+QQQQENAA
Sbjct: 200 YLYYKVPAAVPEQSDEQQQQENAA 223

[Close]
BLAST of MELO3C013165T1 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 34  DQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMSTFGTTYYDSGVGQSSDFGRGYYNSK 93
           DQLEEVDQ+ EE  P+TQTQ  SEH YVS VMMM TFGTTYYD GVGQSSDF   YYNS+
Sbjct: 169 DQLEEVDQNVEEVAPVTQTQ--SEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSE 228

Query: 94  AGQSSMDFGQQ 105
           AG SS +FGQQ
Sbjct: 229 AGSSSSNFGQQ 237

The following BLAST results are available for this feature:
BLAST of MELO3C013165T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|4.6e-6384.03PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|4.1e-1974.65PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013165MELO3C013165gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013165T1MELO3C013165T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013165T1.cds1MELO3C013165T1.cds1CDS