MELO3C013165 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013165
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLong-chain fatty alcohol dehydrogenase family protein
Locationchr1 : 12831375 .. 12831833 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

mRNA sequence

ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

Coding sequence (CDS)

ATGGATGGGAGTATTTTCGCAGATAAATCAACTCGTTATGTGCACCTAATGTTCCTACCATTCTTAGTTCAGAGGAGACGTCCTCTGGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGAGGAAGAAGCGCCTCCCATGACACAGACACAGAAACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGTCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCATCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAATGGACTTTGGGCAACAATACTATGATTTAGGGAGCTATCCATCGTCTTCATACATGCATGGTCATGGGCGTGGTCGTGGAGAATATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATAAGCAACAACAACAAGAGAATGCAGCG

Protein sequence

MDGSIFADKSTRYVHLMFLPFLVQRRRPLVQEPDQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMSTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSMDFGQQYYDLGSYPSSSYMHGHGRGRGEYNEYLYYEVPAAVPEQSDKQQQQENAA
Homology
[Close]
BLAST of MELO3C013165 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 121/144 (84.03%), Postives = 129/144 (89.58%), Query Frame = 1 

Query: 14  VHLMF----LPFLVQRRRPLVQEPDQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMST 73
           +H M+    +P  VQRRRPLVQE DQLEEVDQH EE PPMTQTQ QSEH+YVSPVMMM T
Sbjct: 80  IHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPT 139

Query: 74  FGTTYYDSGVGQSSDFGRGYYNSKAGQSSMDFGQQYYDLGSYPSSSYMHGHGRGRGEYNE 133
           FG TYYDSGVGQSSDFGRGYYNS+AGQSS DFGQQYYDLGS PSSSYMHGHGRGRGE+NE
Sbjct: 140 FGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNE 199

Query: 134 YLYYEVPAAVPEQSDKQQQQENAA 154
           YLYY+VPAAVPEQSD+QQQQENAA
Sbjct: 200 YLYYKVPAAVPEQSDEQQQQENAA 223

[Close]
BLAST of MELO3C013165 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 34  DQLEEVDQHEEEAPPMTQTQKQSEHSYVSPVMMMSTFGTTYYDSGVGQSSDFGRGYYNSK 93
           DQLEEVDQ+ EE  P+TQTQ  SEH YVS VMMM TFGTTYYD GVGQSSDF   YYNS+
Sbjct: 169 DQLEEVDQNVEEVAPVTQTQ--SEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSE 228

Query: 94  AGQSSMDFGQQ 105
           AG SS +FGQQ
Sbjct: 229 AGSSSSNFGQQ 237

The following BLAST results are available for this feature:
BLAST of MELO3C013165 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|4.6e-6384.03PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|4.1e-1974.65PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013165T1MELO3C013165T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013165Silver-seed gourdcarmeB0890
MELO3C013165Cucumber (Chinese Long) v3cucmeB552
MELO3C013165Watermelon (97103) v2mewmbB228
MELO3C013165Wax gourdmewgoB255
MELO3C013165Cucumber (Gy14) v1cgymeB136
MELO3C013165Cucurbita maxima (Rimu)cmameB018
MELO3C013165Cucurbita maxima (Rimu)cmameB395
MELO3C013165Cucurbita moschata (Rifu)cmomeB007
MELO3C013165Cucurbita moschata (Rifu)cmomeB386
MELO3C013165Wild cucumber (PI 183967)cpimeB542
MELO3C013165Cucumber (Chinese Long) v2cumeB534
MELO3C013165Watermelon (Charleston Gray)mewcgB180
MELO3C013165Watermelon (97103) v1mewmB201
MELO3C013165Cucurbita pepo (Zucchini)cpemeB503
MELO3C013165Cucurbita pepo (Zucchini)cpemeB713
MELO3C013165Bottle gourd (USVL1VR-Ls)lsimeB188
MELO3C013165Cucumber (Gy14) v2cgybmeB472