MELO3C021839T1 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGAATATTGGGGTTTGGATGCAGTTTTTCAGCCATTTAACGATAGTAGAAGCAATTTGGAGAGCCCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCCCACTATTAGGCTTATGGGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATCATGGTCAAAACAATTTGCGCCAGTTGTATGTAGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCAAGGCATGGAAATTTGTAAAGAAGATTAAGAGTTTGCGACATTGTGAGGGTACTACAGAACAATATGATAATTAGAGACATCTAGAAATAGAATTACAATTAATGCTATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATCTCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAACGAATTGTGTTTTGGCAATAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGTTGTTAATACTCTAAGAGATTTAGACAAGGTGAAACGAAAGCGATTAGAGTTGGAGAAGGAAAACAATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATAAAGAGATAAAAGCTAAAACGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCATAATGCATTACATGAACAAACCATGTCATTTCAACAGACCACTATGGGAATTGAGGTTCTGCAACATTTGATTAAAGAATACAAATCCCAACTTATTGAAGTGGAAAGCAAAAACAGATTTTTGTAAAAAGCCATTAACAATTCTGAAAGCCAGTTGCTGATATGTCGCAAAGCAAGGGAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAAATGTCAATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGAAAGTATGATTATGCTATAGGTCGGATGGAACGAGGGGCGGAAAAATTAAGACAAATGGCAAGGGTGGCAGATCAATTCTCAGTGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACCCGCGACACCAATAGAGAATTGTCTAATTTTCTAGGAATCATAGGGCAGTACCTCGGATGTTTTGGGTGCTACCATTAG ATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGAATATTGGGGTTTGGATGCAGTTTTTCAGCCATTTAACGATAGTAGAAGCAATTTGGAGAGCCCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCCCACTATTAGGCTTATGGGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATCATGGTCAAAACAATTTGCGCCAGTTGTATGTAGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCAAGGCATGGAAATTTGTAAAGAAGATTAAGAGTTTGCGACATTGTGAGGAATCCTTAGTTCCAAACATAGAATTGAAGAAATCTCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAACGAATTGTGTTTTGGCAATAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGTTGTTAATACTCTAAGAGATTTAGACAAGGTGAAACGAAAGCGATTAGAGTTGGAGAAGGAAAACAATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATAAAGAGATAAAAGCTAAAACGGACGAGTACGAGACATTGAGACGAAAGTATGATTATGCTATAGGTCGGATGGAACGAGGGGCGGAAAAATTAAGACAAATGGCAAGGGTGGCAGATCAATTCTCAGTGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACCCGCGACACCAATAGAGAATTGTCTAATTTTCTAGGAATCATAGGGCAGTACCTCGGATGTTTTGGGTGCTACCATTAG ATGGCGGAGACTTTTAGATCGCTAAATCATTGTCGAATCCAAGGTAAAGGAAAATTCTTCAGCTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCATCTAAGGTATCCTATTAATTTTGGATATTCTCAAATAAAATTCAGCAGTCTGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCCAGAATATTGGGGTTTGGATGCAGTTTTTCAGCCATTTAACGATAGTAGAAGCAATTTGGAGAGCCCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCCCACTATTAGGCTTATGGGGGGCATTGCTTATTCTCCTCTTTTGGTACTACGTCAATCATGGTCAAAACAATTTGCGCCAGTTGTATGTAGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCAAGGCATGGAAATTTGTAAAGAAGATTAAGAGTTTGCGACATTGTGAGGAATCCTTAGTTCCAAACATAGAATTGAAGAAATCTCATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAAACGAATTGTGTTTTGGCAATAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGTTGTTAATACTCTAAGAGATTTAGACAAGGTGAAACGAAAGCGATTAGAGTTGGAGAAGGAAAACAATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATAAAGAGATAAAAGCTAAAACGGACGAGTACGAGACATTGAGACGAAAGTATGATTATGCTATAGGTCGGATGGAACGAGGGGCGGAAAAATTAAGACAAATGGCAAGGGTGGCAGATCAATTCTCAGTGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACCCGCGACACCAATAGAGAATTGTCTAATTTTCTAGGAATCATAGGGCAGTACCTCGGATGTTTTGGGTGCTACCATTAG MAETFRSLNHCRIQGKGKFFSCAPMLFIWISSHLRYPINFGYSQIKFSSLWNNTRNTIREFNSAHWDPKDPEYWGLDAVFQPFNDSRSNLESPLDAHKSFDIPLWKIGFYPTIRLMGGIAYSPLLVLRQSWSKQFAPVVCRLEDWEFSYESNIANNKIHEAVKAWKFVKKIKSLRHCEESLVPNIELKKSHDKEKELKRLRETNCVLAIENEKLREEVKKWVQQVVNTLRDLDKVKRKRLELEKENNSLNTEAIQVRKKNKRLLRNIANLHKEIKAKTDEYETLRRKYDYAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSNFLGIIGQYLGCFGCYH*
BLAST of MELO3C021839T1 vs. Swiss-Prot
Match: HOME2_MOUSE (Homer protein homolog 2 OS=Mus musculus GN=Homer2 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.3e-06 Identity = 41/154 (26.62%), Postives = 74/154 (48.05%), Query Frame = 1
BLAST of MELO3C021839T1 vs. Swiss-Prot
Match: HOME2_HUMAN (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 7.0e-06 Identity = 41/154 (26.62%), Postives = 74/154 (48.05%), Query Frame = 1
BLAST of MELO3C021839T1 vs. Swiss-Prot
Match: HOME2_RAT (Homer protein homolog 2 OS=Rattus norvegicus GN=Homer2 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.1e-06 Identity = 41/154 (26.62%), Postives = 73/154 (47.40%), Query Frame = 1
BLAST of MELO3C021839T1 vs. TrEMBL
Match: A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19 Identity = 83/301 (27.57%), Postives = 145/301 (48.17%), Query Frame = 1
BLAST of MELO3C021839T1 vs. TrEMBL
Match: A0A061F212_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025984 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18 Identity = 82/301 (27.24%), Postives = 143/301 (47.51%), Query Frame = 1
BLAST of MELO3C021839T1 vs. TrEMBL
Match: A0A061E378_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008095 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18 Identity = 82/301 (27.24%), Postives = 143/301 (47.51%), Query Frame = 1
BLAST of MELO3C021839T1 vs. TrEMBL
Match: A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16 Identity = 92/370 (24.86%), Postives = 158/370 (42.70%), Query Frame = 1
BLAST of MELO3C021839T1 vs. TrEMBL
Match: A0A061DPM2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003960 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16 Identity = 80/301 (26.58%), Postives = 142/301 (47.18%), Query Frame = 1
BLAST of MELO3C021839T1 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo]) HSP 1 Score: 173.3 bits (438), Expect = 7.4e-40 Identity = 88/109 (80.73%), Postives = 96/109 (88.07%), Query Frame = 1
BLAST of MELO3C021839T1 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo]) HSP 1 Score: 85.9 bits (211), Expect = 1.6e-13 Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
HSP 2 Score: 104.0 bits (258), Expect = 5.5e-19 Identity = 83/301 (27.57%), Postives = 145/301 (48.17%), Query Frame = 1
BLAST of MELO3C021839T1 vs. NCBI nr
Match: gi|590641252|ref|XP_007030180.1| (Uncharacterized protein TCM_025984 [Theobroma cacao]) HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18 Identity = 82/301 (27.24%), Postives = 143/301 (47.51%), Query Frame = 1
BLAST of MELO3C021839T1 vs. NCBI nr
Match: gi|590690716|ref|XP_007043584.1| (Uncharacterized protein TCM_008095 [Theobroma cacao]) HSP 1 Score: 100.1 bits (248), Expect = 7.9e-18 Identity = 82/301 (27.24%), Postives = 143/301 (47.51%), Query Frame = 1
BLAST of MELO3C021839T1 vs. NCBI nr
Match: gi|590715508|ref|XP_007050215.1| (Uncharacterized protein TCM_003960 [Theobroma cacao]) HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16 Identity = 80/301 (26.58%), Postives = 142/301 (47.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
|