MELO3C024774T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024774T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionS-adenosylmethionine:tRNA ribosyltransferase-isomerase
Locationchr11 : 8067549 .. 8067857 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

mRNA sequence

ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

Coding sequence (CDS)

ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

Protein sequence

MPSSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYDLAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK*
Homology
[Close]
BLAST of MELO3C024774T1 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 

Query: 3   SSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYD 62
           SSP+ + +K+  LIL+    TS P Q++ PQP   IPIN+ K  SPE SN++VFH++FY 
Sbjct: 32  SSPKHKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYV 91

Query: 63  LAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK 103
              L+DD +K+SEEG       KGKEV+++AIDDPLQ +K
Sbjct: 92  PTTLLDDATKESEEG------GKGKEVLEEAIDDPLQREK 125

[Close]
BLAST of MELO3C024774T1 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-17
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 

Query: 3   SSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYD 62
           SSP+ + +K+  LIL+    TS P Q++ PQP   IPIN+ K  SPE SN++VFH++FY 
Sbjct: 32  SSPKHKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYV 91

Query: 63  LAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK 103
              L+DD +K+SEEG       KGKEV+++AIDDPLQ +K
Sbjct: 92  PTTLLDDATKESEEG------GKGKEVLEEAIDDPLQREK 125

The following BLAST results are available for this feature:
BLAST of MELO3C024774T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCD9_CUCME5.2e-1750.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C024774T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136315|gb|ADN34138.1|7.5e-1750.00hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024774MELO3C024774gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024774T1MELO3C024774T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024774T1.cds1MELO3C024774T1.cds1CDS