MELO3C024774 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024774
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionS-adenosylmethionine:tRNA ribosyltransferase-isomerase
Locationchr11 : 8067549 .. 8067857 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

mRNA sequence

ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

Coding sequence (CDS)

ATGCCTTCCTCACCAAGGGAAGAAGTCGATAAAGAACGTACCCTTATTTTGTACAACTCAACAGAAACCTCTACCCCACGTCAAAAGGACATTCCTCAACCTCCTGCCATAATCCCAATCAACAAAACCAAACTACTGAGCCCTGAAGGATCAAACAAGGAAGTTTTCCACAAATCCTTTTATGATCTAGCAGCACTTATGGATGACACGTCCAAGAAGTCTGAAGAAGGGGTGCATAGTACTGTGGCATCAAAAGGAAAAGAAGTCATGAAGAAGGCTATTGATGACCCACTCCAAGGGAAAAAATAA

Protein sequence

MPSSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYDLAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK*
Homology
[Close]
BLAST of MELO3C024774 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 

Query: 3   SSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYD 62
           SSP+ + +K+  LIL+    TS P Q++ PQP   IPIN+ K  SPE SN++VFH++FY 
Sbjct: 32  SSPKHKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYV 91

Query: 63  LAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK 103
              L+DD +K+SEEG       KGKEV+++AIDDPLQ +K
Sbjct: 92  PTTLLDDATKESEEG------GKGKEVLEEAIDDPLQREK 125

[Close]
BLAST of MELO3C024774 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-17
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 

Query: 3   SSPREEVDKERTLILYNSTETSTPRQKDIPQPPAIIPINKTKLLSPEGSNKEVFHKSFYD 62
           SSP+ + +K+  LIL+    TS P Q++ PQP   IPIN+ K  SPE SN++VFH++FY 
Sbjct: 32  SSPKHKTNKKCVLILFYLAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYV 91

Query: 63  LAALMDDTSKKSEEGVHSTVASKGKEVMKKAIDDPLQGKK 103
              L+DD +K+SEEG       KGKEV+++AIDDPLQ +K
Sbjct: 92  PTTLLDDATKESEEG------GKGKEVLEEAIDDPLQREK 125

The following BLAST results are available for this feature:
BLAST of MELO3C024774 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCD9_CUCME5.2e-1750.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C024774 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136315|gb|ADN34138.1|7.5e-1750.00hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024774T1MELO3C024774T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024774Wax gourdmewgoB126
MELO3C024774Cucumber (Gy14) v1cgymeB072
MELO3C024774Cucurbita maxima (Rimu)cmameB493
MELO3C024774Cucurbita maxima (Rimu)cmameB534
MELO3C024774Cucurbita moschata (Rifu)cmomeB483
MELO3C024774Cucurbita moschata (Rifu)cmomeB524
MELO3C024774Wild cucumber (PI 183967)cpimeB096
MELO3C024774Cucumber (Chinese Long) v2cumeB087
MELO3C024774Watermelon (Charleston Gray)mewcgB090
MELO3C024774Watermelon (97103) v1mewmB125
MELO3C024774Cucurbita pepo (Zucchini)cpemeB260
MELO3C024774Cucurbita pepo (Zucchini)cpemeB672
MELO3C024774Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024774Cucumber (Gy14) v2cgybmeB083
MELO3C024774Silver-seed gourdcarmeB0935
MELO3C024774Cucumber (Chinese Long) v3cucmeB103
MELO3C024774Watermelon (97103) v2mewmbB092