MELO3C010208T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C010208T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionlow-molecular-weight cysteine-rich 45
Locationchr2 : 14603400 .. 14604687 (+)
Sequence length1288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAATTTACCTCAAATCAATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCACCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTATGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCTTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

mRNA sequence

TAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAATTTACCTCAAATCAATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCACCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTATGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCTTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

Coding sequence (CDS)

ATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

Protein sequence

MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAWHRSYSSRGCLPTVSLLYIWFGILWSISA*
Homology
[Close]
BLAST of MELO3C010208T1 vs. TrEMBL
Match: A0A0A0LTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.3e-47
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKER-LPSSDPHLSPP 75
           MAD KPLHVLLI+APLL+L ASQLN IFA TDS TP NLPQQT N+E  LPSSDPHLSPP
Sbjct: 1   MADLKPLHVLLIIAPLLIL-ASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPP 60

Query: 76  LSNQRAARNN-TKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAW-HRSYSSRGCL 135
           LSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKRRRRNH RAW  R+YSS GC 
Sbjct: 61  LSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCR 120

Query: 136 PTVSLLYIWFGILWSI 149
            TVSL YIWFGI WSI
Sbjct: 121 LTVSLSYIWFGIFWSI 134

[Close]
BLAST of MELO3C010208T1 vs. NCBI nr
Match: gi|700210079|gb|KGN65175.1| (hypothetical protein Csa_1G257320 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKER-LPSSDPHLSPP 75
           MAD KPLHVLLI+APLL+L ASQLN IFA TDS TP NLPQQT N+E  LPSSDPHLSPP
Sbjct: 1   MADLKPLHVLLIIAPLLIL-ASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPP 60

Query: 76  LSNQRAARNN-TKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAW-HRSYSSRGCL 135
           LSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKRRRRNH RAW  R+YSS GC 
Sbjct: 61  LSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCR 120

Query: 136 PTVSLLYIWFGILWSI 149
            TVSL YIWFGI WSI
Sbjct: 121 LTVSLSYIWFGIFWSI 134

The following BLAST results are available for this feature:
BLAST of MELO3C010208T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC2_CUCSA9.3e-4778.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1[more]
BLAST of MELO3C010208T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210079|gb|KGN65175.1|1.3e-4678.68hypothetical protein Csa_1G257320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C010208MELO3C010208gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C010208T1MELO3C010208T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C010208T1.cds1MELO3C010208T1.cds1CDS