MELO3C024663T1 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTAAGCCTCGCTGTACTATGAAAGTTGATCTTTAAAAAGCTTATGACTCTGTTAACTGGGACTTTTTGTTTGGCTTGTTGATTGCTATTGGTACTCCATTGAGGTTTGTGAGCTGGATCCGGGCCTGTGTTACTTCCTCTATGTTCTCCATTATGATTAATGGCTCATTGGACAGGAAAGGTGTAAGGCAGAGTGATCCTTTATCTCTATTCCTTTTTGTTATTGTAATGGAAGTTCATTCTCGTATGCTGAATAGGCCTCCCCAGGATTTCTATTTTCATCAGCGATGTGAGAAGGTTAGTTTAACTCACCTGACCATTGTTGATGACCTTATGATATTTTGTGCTGATGACGAGAGATCTCTAAGTTTTGTTCGTGAGAATCTTTAGAAGTTTGGTGAGCTTTTAGGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGYHLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRSLWVY*
BLAST of MELO3C024663T1 vs. TrEMBL
Match: Q9SL12_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05550 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25 Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1
BLAST of MELO3C024663T1 vs. TrEMBL
Match: O64473_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g19100 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23 Identity = 67/163 (41.10%), Postives = 98/163 (60.12%), Query Frame = 1
BLAST of MELO3C024663T1 vs. TrEMBL
Match: A0A0B2PXK7_GLYSO (Putative ribonuclease H protein (Fragment) OS=Glycine soja GN=glysoja_048340 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17 Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 1
BLAST of MELO3C024663T1 vs. TrEMBL
Match: Q9ZVF0_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g01550 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16 Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 1
BLAST of MELO3C024663T1 vs. TrEMBL
Match: Q9LRQ9_ARATH (Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13 Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
BLAST of MELO3C024663T1 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 66.2 bits (160), Expect = 2.0e-11 Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1
BLAST of MELO3C024663T1 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28 Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1
BLAST of MELO3C024663T1 vs. NCBI nr
Match: gi|702514938|ref|XP_010041623.1| (PREDICTED: uncharacterized protein LOC104430574 [Eucalyptus grandis]) HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25 Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 1
BLAST of MELO3C024663T1 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 123.6 bits (309), Expect = 3.0e-25 Identity = 72/108 (66.67%), Postives = 78/108 (72.22%), Query Frame = 1
BLAST of MELO3C024663T1 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]) HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25 Identity = 68/85 (80.00%), Postives = 70/85 (82.35%), Query Frame = 1
BLAST of MELO3C024663T1 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]) HSP 1 Score: 118.6 bits (296), Expect = 9.6e-24 Identity = 82/201 (40.80%), Postives = 103/201 (51.24%), Query Frame = 1
HSP 2 Score: 122.5 bits (306), Expect = 6.7e-25 Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
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