MELO3C024663 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024663
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionReverse transcriptase-like protein
Locationchr2 : 19889149 .. 19890027 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTAAGCCTCGCTGTACTATGAAAGTTGATCTTTAAAAAGCTTATGACTCTGTTAACTGGGACTTTTTGTTTGGCTTGTTGATTGCTATTGGTACTCCATTGAGGTTTGTGAGCTGGATCCGGGCCTGTGTTACTTCCTCTATGTTCTCCATTATGATTAATGGCTCATTGGACAGGAAAGGTGTAAGGCAGAGTGATCCTTTATCTCTATTCCTTTTTGTTATTGTAATGGAAGTTCATTCTCGTATGCTGAATAGGCCTCCCCAGGATTTCTATTTTCATCAGCGATGTGAGAAGGTTAGTTTAACTCACCTGACCATTGTTGATGACCTTATGATATTTTGTGCTGATGACGAGAGATCTCTAAGTTTTGTTCGTGAGAATCTTTAGAAGTTTGGTGAGCTTTTAGGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG

mRNA sequence

ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG

Coding sequence (CDS)

ATGAAGGATTTTCGACCTGTTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATGTGTGGCTTCCTTCTTTGATTAGTGGTAAGCAGTCTGCTTTTATTCATGGGAAGAGTATTATTGATAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTTGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTGCTTCTCGCCTTGCTGCTAGTATGGGTTTTGTTCTTGGGAATCTCTTTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATTGTGCTCTTCTTATTCAACGTATTACTAGTCGGATTCGTTATTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG

Protein sequence

MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGYHLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRSLWVY*
Homology
[Close]
BLAST of MELO3C024663 vs. TrEMBL
Match: Q9SL12_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05550 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25
Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1 

Query: 1   MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
           MKD+RP+SCCNVIYK ISKI+ANRL   LP+ I+G QSAF+  + +++N++L  EL    
Sbjct: 641 MKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAGNQSAFVQDRLLLENLLLTTEL---- 700

Query: 61  HLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCAL 120
                      KS+I++ G        +     F +G L VRYLGLPLLT RL   D A 
Sbjct: 701 -----------KSTIYMAGNLGSHQREIQEKFHFEVGQLPVRYLGLPLLTKRLTATDYAP 760

Query: 121 LIQRITSRIRYWTARVLSFAGRLQLVRYMLRSL---WVY 157
           L++++  +I  WT R LS AGRL L+  +L S+   W++
Sbjct: 761 LLEQLKRKIGSWTHRYLSNAGRLNLISSVLWSICNFWLF 784

[Close]
BLAST of MELO3C024663 vs. TrEMBL
Match: O64473_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g19100 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 67/163 (41.10%), Postives = 98/163 (60.12%), Query Frame = 1 

Query: 1    MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVG-G 60
            MKD+RP+SCCNVIYK ISKI+ANRL +  P  I+G QSAF+  + +I+N++L  +     
Sbjct: 934  MKDYRPISCCNVIYKVISKIIANRLKLVPPKFIAGNQSAFVKDRLLIENVLLATDTASFS 993

Query: 61   YHLNSCLFAYLGKS---------SIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLT 120
              +N  L  +   +         S ++  +S ++ S++   +    G L VRYLGLPL+T
Sbjct: 994  VQVNGELAGFFQSARGLRQGCSLSPYLFVISMDILSKM---LDKAAGQLPVRYLGLPLVT 1053

Query: 121  GRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRSL 154
             RL   D   LI++I  RI  WT+R LS+AGRL L+  +L S+
Sbjct: 1054 KRLSSADSLPLIEQIRHRIGTWTSRFLSYAGRLNLISSVLSSI 1093

[Close]
BLAST of MELO3C024663 vs. TrEMBL
Match: A0A0B2PXK7_GLYSO (Putative ribonuclease H protein (Fragment) OS=Glycine soja GN=glysoja_048340 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 1 

Query: 1   MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
           +KD+ P+  C ++YK I+KI+  RL   LPS+IS  Q+AF+ G++I ++I+L  EL+ GY
Sbjct: 20  VKDYHPIVGCTIVYKIIAKIITERLGKILPSIISHSQAAFVPGQNIHNHILLAYELLNGY 79

Query: 61  HL----------------------------NSCLFAYLGKSSIFVVGVSNEVASRLAASM 120
                                         ++ L     K  +F  G+       L    
Sbjct: 80  GRKGGTPRVMMQGDSKSVSMMMETIRKFSDSTGLKVNPAKCQMFFGGMDGCSKENLRRIT 139

Query: 121 GFVLGNLFVRYLGLPLLTGRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRS 157
            F  G L VRYLG+PL   RL       LI +I  R+++WT+++LS+AGR+QLV+ +  +
Sbjct: 140 DFAEGKLPVRYLGVPLSCKRLTIQQYMPLIDKIVDRVKHWTSKLLSYAGRIQLVKSITSA 199

[Close]
BLAST of MELO3C024663 vs. TrEMBL
Match: Q9ZVF0_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g01550 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 1 

Query: 1    MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
            MKD+RP+SCCNVIYK ISKI+ANRL   LP+ I+G QSAF+  + +I+N++L  ELV  Y
Sbjct: 941  MKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDY 1000

Query: 61   HLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNL-----FVRYLGLPLLTGRLCP 120
            H ++      G+ +I  + +S    S   + +  VL  L     FV ++ L + T     
Sbjct: 1001 HKDT----ISGRCAI-KIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSV 1060

Query: 121  NDCALLI-------QRITSRIRYWTARVLSFAGRLQLVRYMLRSL 154
                 L        +++  +I  WTAR LS+AGRL L+  +L S+
Sbjct: 1061 QVNGELAGYFQSSREQLKKKIGSWTARFLSYAGRLNLISSVLWSI 1100

[Close]
BLAST of MELO3C024663 vs. TrEMBL
Match: Q9LRQ9_ARATH (Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1 

Query: 1   MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
           M+D+RP+SCCNV+YK ISKI+ANRL   LP  ISG QSAF+  + +I+N++L  ELV  Y
Sbjct: 491 MRDYRPISCCNVLYKVISKIIANRLKRILPKFISGNQSAFVKDRLLIENVLLATELVKDY 550

Query: 61  HLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYL 105
           H  S           F V V+ E+A    ++ G   G     YL
Sbjct: 551 HKTS-----------FSVQVNGELAGYFRSARGIRQGCALSPYL 583

[Close]
BLAST of MELO3C024663 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-11
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 77  VVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCALLIQRITSRIRYWTARV 136
           + GV +   + +  S  F  G L VRYLGLPLLT ++  +D   L+++I  RI  WTAR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 137 LSFAGRLQLVRYMLRSL 154
           LSFAGRLQL+  ++ SL
Sbjct: 61  LSFAGRLQLISSVIHSL 77

[Close]
BLAST of MELO3C024663 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 46  IIDNIMLFQELVGGYHLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLG 105
           I D +  F EL G       LFA   KSSIFV GV+NE AS LAA MGFV GNL VRYLG
Sbjct: 139 IRDCLQKFGELSG-------LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVRYLG 198

Query: 106 LPLLTGRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRSLWVY 157
           LPLLTGRLC NDCA LIQRITS+IR WTARVLSFAGR+QLV  +LRSL VY
Sbjct: 199 LPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVY 242

[Close]
BLAST of MELO3C024663 vs. NCBI nr
Match: gi|702514938|ref|XP_010041623.1| (PREDICTED: uncharacterized protein LOC104430574 [Eucalyptus grandis])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 1 

Query: 3   DFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGYHL 62
           DFRP++CCN IYKCI+K++ANRL   LPS+IS  Q+AF+ G+ I DNI+L QEL  G+  
Sbjct: 148 DFRPIACCNTIYKCITKLIANRLARVLPSIISLPQNAFVKGRHISDNILLAQELFSGFQH 207

Query: 63  NSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCALLI 122
           +     Y  K    V+ V  + A     S+ F       RYLG+P+++ RL   DC  L+
Sbjct: 208 D----PYRAKC---VIKVDFKKAYDTVGSLPF-------RYLGVPVISARLGKADCITLV 267

Query: 123 QRITSRIRYWTARVLSFAGRLQLVRYMLRSLWVY 157
             IT+RI+ WT R LSFAGR+QLV+ +L S+ V+
Sbjct: 268 NAITARIQSWTHRFLSFAGRVQLVKSVLYSIQVF 287

[Close]
BLAST of MELO3C024663 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-25
Identity = 72/108 (66.67%), Postives = 78/108 (72.22%), Query Frame = 1 

Query: 49  NIMLFQELVGGYHLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPL 108
           +I   +E +  +   S LFA   KSSIFV GV+NE AS LA  MGFV GNL VRYLGLPL
Sbjct: 79  SIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPL 138

Query: 109 LTGRLCPNDCALLIQRITSRIRYWTARVLSFAGRLQLVRYMLRSLWVY 157
           L GRL  ND A LIQRITSRIR WTARVLSFAGRLQLV  +LRS  VY
Sbjct: 139 LAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVY 186

[Close]
BLAST of MELO3C024663 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 68/85 (80.00%), Postives = 70/85 (82.35%), Query Frame = 1 

Query: 72  KSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCALLIQRITSRIRY 131
           KSSIFV GVS+E AS LAASMGF LGNL VRYLGLPLLTGRL  NDCA LIQRITS IR 
Sbjct: 904 KSSIFVAGVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 963

Query: 132 WTARVLSFAGRLQLVRYMLRSLWVY 157
           WTARVLSF G LQLVR +L SL VY
Sbjct: 964 WTARVLSFFGTLQLVRSVLHSLQVY 988

[Close]
BLAST of MELO3C024663 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 9.6e-24
Identity = 82/201 (40.80%), Postives = 103/201 (51.24%), Query Frame = 1 

Query: 1   MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
           M++FRP+SCCNVIYKCISKILA+R+ VWLPS IS  QSAF+ G+SIIDNI+L QELVGGY
Sbjct: 798 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 857

Query: 61  HLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCAL 120
           HLN       GK   + + V  + A   + +  F+ G L    +G PL   R      ++
Sbjct: 858 HLN------FGKPR-YTLKVDLQKAYD-SVNWDFLFGLLIA--IGTPLKFERCKARKSSI 917

Query: 121 LIQRIT---------------------------------------------SRIRYWTAR 157
            +  ++                                             S IR WTAR
Sbjct: 918 FVAGVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTAR 977


HSP 2 Score: 122.5 bits (306), Expect = 6.7e-25
Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1 

Query: 1   MKDFRPVSCCNVIYKCISKILANRLHVWLPSLISGKQSAFIHGKSIIDNIMLFQELVGGY 60
           MKD+RP+SCCNVIYK ISKI+ANRL   LP+ I+G QSAF+  + +++N++L  EL    
Sbjct: 641 MKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAGNQSAFVQDRLLLENLLLTTEL---- 700

Query: 61  HLNSCLFAYLGKSSIFVVGVSNEVASRLAASMGFVLGNLFVRYLGLPLLTGRLCPNDCAL 120
                      KS+I++ G        +     F +G L VRYLGLPLLT RL   D A 
Sbjct: 701 -----------KSTIYMAGNLGSHQREIQEKFHFEVGQLPVRYLGLPLLTKRLTATDYAP 760

Query: 121 LIQRITSRIRYWTARVLSFAGRLQLVRYMLRSL---WVY 157
           L++++  +I  WT R LS AGRL L+  +L S+   W++
Sbjct: 761 LLEQLKRKIGSWTHRYLSNAGRLNLISSVLWSICNFWLF 784

The following BLAST results are available for this feature:
BLAST of MELO3C024663 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9SL12_ARATH4.6e-2543.40Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A... [more]
O64473_ARATH7.4e-2341.10Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A... [more]
A0A0B2PXK7_GLYSO4.7e-1732.07Putative ribonuclease H protein (Fragment) OS=Glycine soja GN=glysoja_048340 PE=... [more]
Q9ZVF0_ARATH3.0e-1638.18Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A... [more]
Q9LRQ9_ARATH1.8e-1344.23Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1[more]
BLAST of MELO3C024663 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24255.12.0e-1146.75 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of MELO3C024663 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126450|ref|XP_008463188.1|1.7e-2870.27PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|702514938|ref|XP_010041623.1|1.0e-2546.10PREDICTED: uncharacterized protein LOC104430574 [Eucalyptus grandis][more]
gi|659121154|ref|XP_008460525.1|3.0e-2566.67PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum... [more]
gi|659114595|ref|XP_008457134.1|5.1e-2580.00PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659114595|ref|XP_008457134.1|9.6e-2440.80PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024663T1MELO3C024663T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..56
score: 3.4
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 1..141
score: 5.1
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 1..141
score: 5.1