MELO3C014426T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014426T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TCP family transcription factor
Location	chr5 : 2519164 .. 2519349 (-)
Sequence length	186

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

mRNA sequence

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Coding sequence (CDS)

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Protein sequence

MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGYK*

Homology

[Close]

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 198 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 250

[Close]

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: PCF5_ORYSJ (Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 74  EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 126

[Close]

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP4_ARATH (Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-11
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-10
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

[Close]

BLAST of MELO3C014426T1 vs. TrEMBL
Match: E0CTN3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK+    EIV VQ  HI+ ST RK   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKSAGGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426T1 vs. TrEMBL
Match: M1AX46_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

[Close]

BLAST of MELO3C014426T1 vs. TrEMBL
Match: Q9FR55_SOLLC (Cycloidea OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 123 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 179

[Close]

BLAST of MELO3C014426T1 vs. TrEMBL
Match: E2FYM2_SOLME (Lanceolate OS=Solanum melongena PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

[Close]

BLAST of MELO3C014426T1 vs. TrEMBL
Match: B9S0P2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

[Close]

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-13
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

[Close]

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1


Query: 28 SKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          SKV T+KGP D  V+L   TA++FYD+QDRLGY
Sbjct: 47 SKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGY 79

[Close]

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|697150844|ref|XP_009629629.1| (PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|698468419|ref|XP_009783353.1| (PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|698468415|ref|XP_009783352.1| (PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|223541258|gb|EEF42810.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

[Close]

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|1000965727|ref|XP_015574905.1| (PREDICTED: transcription factor TCP4 [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 22 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 78

The following BLAST results are available for this feature:

BLAST of MELO3C014426T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP10_ARATH	2.6e-12	67.92	Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1	[more]
PCF5_ORYSI	7.4e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1	[more]
PCF5_ORYSJ	7.4e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1	[more]
TCP4_ARATH	1.7e-11	67.92	Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1	[more]
TCP3_ARATH	2.4e-10	66.04	Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1	[more]

BLAST of MELO3C014426T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTN3_VITVI	5.7e-11	65.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=...	[more]
M1AX46_SOLTU	5.7e-11	68.42	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1	[more]
Q9FR55_SOLLC	5.7e-11	68.42	Cycloidea OS=Solanum lycopersicum PE=2 SV=1	[more]
E2FYM2_SOLME	5.7e-11	68.42	Lanceolate OS=Solanum melongena PE=4 SV=1	[more]
B9S0P2_RICCO	5.7e-11	68.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1	[more]

BLAST of MELO3C014426T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31070.1	1.4e-13	67.92	TCP domain protein 10	[more]
AT3G15030.1	9.3e-13	67.92	TCP family transcription factor 4	[more]
AT1G53230.1	1.3e-11	66.04	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT4G18390.1	3.8e-06	63.64	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

BLAST of MELO3C014426T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|697150844\|ref\|XP_009629629.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis]	[more]
gi\|698468419\|ref\|XP_009783353.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris]	[more]
gi\|698468415\|ref\|XP_009783352.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris]	[more]
gi\|223541258\|gb\|EEF42810.1\|	8.2e-11	68.42	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000965727\|ref\|XP_015574905.1\|	8.2e-11	68.42	PREDICTED: transcription factor TCP4 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048513	animal organ development
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0044802	single-organism membrane organization
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0009725	response to hormone
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048366	leaf development
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0006464	cellular protein modification process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014426	MELO3C014426	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C014426T1	MELO3C014426T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014426T1.cds1	MELO3C014426T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 22..61 score: 9.
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 20..61 score: 1
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 8..60 score: 5.4
None	No IPR available	PANTHER	PTHR31072:SF13	SUBFAMILY NOT NAMED	coord: 8..60 score: 5.4