MELO3C014426 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014426
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TCP family transcription factor
Location	chr5 : 2519164 .. 2519349 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

mRNA sequence

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Coding sequence (CDS)

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Protein sequence

MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGYK*

Homology

[Close]

BLAST of MELO3C014426 vs. Swiss-Prot
Match: TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426 vs. Swiss-Prot
Match: PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 198 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 250

[Close]

BLAST of MELO3C014426 vs. Swiss-Prot
Match: PCF5_ORYSJ (Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 74  EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 126

[Close]

BLAST of MELO3C014426 vs. Swiss-Prot
Match: TCP4_ARATH (Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-11
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-10
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

[Close]

BLAST of MELO3C014426 vs. TrEMBL
Match: E0CTN3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK+    EIV VQ  HI+ ST RK   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKSAGGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. TrEMBL
Match: M1AX46_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

[Close]

BLAST of MELO3C014426 vs. TrEMBL
Match: Q9FR55_SOLLC (Cycloidea OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 123 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 179

[Close]

BLAST of MELO3C014426 vs. TrEMBL
Match: E2FYM2_SOLME (Lanceolate OS=Solanum melongena PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

[Close]

BLAST of MELO3C014426 vs. TrEMBL
Match: B9S0P2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

[Close]

BLAST of MELO3C014426 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-13
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

[Close]

BLAST of MELO3C014426 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1


Query: 28 SKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          SKV T+KGP D  V+L   TA++FYD+QDRLGY
Sbjct: 47 SKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGY 79

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: gi|697150844|ref|XP_009629629.1| (PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: gi|698468419|ref|XP_009783353.1| (PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: gi|698468415|ref|XP_009783352.1| (PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: gi|223541258|gb|EEF42810.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: gi|1000965727|ref|XP_015574905.1| (PREDICTED: transcription factor TCP4 [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 22 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 78

The following BLAST results are available for this feature:

BLAST of MELO3C014426 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP10_ARATH	2.6e-12	67.92	Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1	[more]
PCF5_ORYSI	7.4e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1	[more]
PCF5_ORYSJ	7.4e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1	[more]
TCP4_ARATH	1.7e-11	67.92	Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1	[more]
TCP3_ARATH	2.4e-10	66.04	Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1	[more]

BLAST of MELO3C014426 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTN3_VITVI	5.7e-11	65.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=...	[more]
M1AX46_SOLTU	5.7e-11	68.42	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1	[more]
Q9FR55_SOLLC	5.7e-11	68.42	Cycloidea OS=Solanum lycopersicum PE=2 SV=1	[more]
E2FYM2_SOLME	5.7e-11	68.42	Lanceolate OS=Solanum melongena PE=4 SV=1	[more]
B9S0P2_RICCO	5.7e-11	68.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1	[more]

BLAST of MELO3C014426 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31070.1	1.4e-13	67.92	TCP domain protein 10	[more]
AT3G15030.1	9.3e-13	67.92	TCP family transcription factor 4	[more]
AT1G53230.1	1.3e-11	66.04	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT4G18390.1	3.8e-06	63.64	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

BLAST of MELO3C014426 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|697150844\|ref\|XP_009629629.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis]	[more]
gi\|698468419\|ref\|XP_009783353.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris]	[more]
gi\|698468415\|ref\|XP_009783352.1\|	4.8e-11	65.00	PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris]	[more]
gi\|223541258\|gb\|EEF42810.1\|	8.2e-11	68.42	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000965727\|ref\|XP_015574905.1\|	8.2e-11	68.42	PREDICTED: transcription factor TCP4 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048513	animal organ development
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0051716	cellular response to stimulus
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0048731	system development
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0008152	metabolic process
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0044802	single-organism membrane organization
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0009725	response to hormone
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0048366	leaf development
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014426T1	MELO3C014426T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 22..61 score: 9.
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 20..61 score: 1
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 8..60 score: 5.4
None	No IPR available	PANTHER	PTHR31072:SF13	SUBFAMILY NOT NAMED	coord: 8..60 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014426	Cla016274	Watermelon (97103) v1	mewmB391
MELO3C014426	ClCG09G011310	Watermelon (Charleston Gray)	mewcgB357
MELO3C014426	Cla97C09G174040	Watermelon (97103) v2	mewmbB409
MELO3C014426	Bhi10G000813	Wax gourd	mewgoB482
MELO3C014426	CmaCh11G019240	Cucurbita maxima (Rimu)	cmameB134
MELO3C014426	CmoCh11G020050	Cucurbita moschata (Rifu)	cmomeB124
MELO3C014426	Lsi11G016840	Bottle gourd (USVL1VR-Ls)	lsimeB111
MELO3C014426	Carg04633	Silver-seed gourd	carmeB0397
MELO3C014426	CsaV3_6G015230	Cucumber (Chinese Long) v3	cucmeB505

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014426	Cucumber (Chinese Long) v3	cucmeB503
MELO3C014426	Wax gourd	mewgoB472
MELO3C014426	Cucurbita maxima (Rimu)	cmameB476
MELO3C014426	Cucurbita moschata (Rifu)	cmomeB468
MELO3C014426	Wild cucumber (PI 183967)	cpimeB493
MELO3C014426	Cucumber (Chinese Long) v2	cumeB491
MELO3C014426	Cucurbita pepo (Zucchini)	cpemeB236
MELO3C014426	Cucurbita pepo (Zucchini)	cpemeB634
MELO3C014426	Cucumber (Gy14) v2	cgybmeB432