MELO3C014426T1 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C014426T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTCP family transcription factor
Locationchr5 : 2519164 .. 2519349 (-)
Sequence length186
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

mRNA sequence

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Coding sequence (CDS)

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Protein sequence

MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGYK*
BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP10_ARATH (Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: PCF5_ORYSI (Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 198 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 250

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: PCF5_ORYSJ (Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.4e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 74  EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 126

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP4_ARATH (Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-11
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

BLAST of MELO3C014426T1 vs. Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-10
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

BLAST of MELO3C014426T1 vs. TrEMBL
Match: E0CTN3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1

Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK+    EIV VQ  HI+ ST RK   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKSAGGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

BLAST of MELO3C014426T1 vs. TrEMBL
Match: M1AX46_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

BLAST of MELO3C014426T1 vs. TrEMBL
Match: Q9FR55_SOLLC (Cycloidea OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 123 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 179

BLAST of MELO3C014426T1 vs. TrEMBL
Match: E2FYM2_SOLME (Lanceolate OS=Solanum melongena PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 11 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 67

BLAST of MELO3C014426T1 vs. TrEMBL
Match: B9S0P2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT3G15030.1 (AT3G15030.1 TCP family transcription factor 4)

HSP 1 Score: 69.3 bits (168), Expect = 9.3e-13
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

BLAST of MELO3C014426T1 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-06
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1

Query: 28 SKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          SKV T+KGP D  V+L   TA++FYD+QDRLGY
Sbjct: 47 SKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGY 79

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|697150844|ref|XP_009629629.1| (PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1

Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|698468419|ref|XP_009783353.1| (PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1

Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|698468415|ref|XP_009783352.1| (PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1

Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T  EIV V+  HIL ST +K   SKV+TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 1  MKRATGGEIVQVEGGHILRSTGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 60

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|223541258|gb|EEF42810.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4   NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 197 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 253

BLAST of MELO3C014426T1 vs. NCBI nr
Match: gi|1000965727|ref|XP_015574905.1| (PREDICTED: transcription factor TCP4 [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1

Query: 4  NTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          NT  EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 22 NTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TCP10_ARATH2.6e-1267.92Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1[more]
PCF5_ORYSI7.4e-1267.92Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=3 SV=1[more]
PCF5_ORYSJ7.4e-1267.92Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1[more]
TCP4_ARATH1.7e-1167.92Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1[more]
TCP3_ARATH2.4e-1066.04Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
E0CTN3_VITVI5.7e-1165.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02520 PE=4 SV=... [more]
M1AX46_SOLTU5.7e-1168.42Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012396 PE=4 SV=1[more]
Q9FR55_SOLLC5.7e-1168.42Cycloidea OS=Solanum lycopersicum PE=2 SV=1[more]
E2FYM2_SOLME5.7e-1168.42Lanceolate OS=Solanum melongena PE=4 SV=1[more]
B9S0P2_RICCO5.7e-1168.42Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1693000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G31070.11.4e-1367.92 TCP domain protein 10[more]
AT3G15030.19.3e-1367.92 TCP family transcription factor 4[more]
AT1G53230.11.3e-1166.04 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3[more]
AT4G18390.13.8e-0663.64 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2[more]
Match NameE-valueIdentityDescription
gi|697150844|ref|XP_009629629.1|4.8e-1165.00PREDICTED: transcription factor TCP4-like [Nicotiana tomentosiformis][more]
gi|698468419|ref|XP_009783353.1|4.8e-1165.00PREDICTED: transcription factor TCP4-like isoform X2 [Nicotiana sylvestris][more]
gi|698468415|ref|XP_009783352.1|4.8e-1165.00PREDICTED: transcription factor TCP4-like isoform X1 [Nicotiana sylvestris][more]
gi|223541258|gb|EEF42810.1|8.2e-1168.42conserved hypothetical protein [Ricinus communis][more]
gi|1000965727|ref|XP_015574905.1|8.2e-1168.42PREDICTED: transcription factor TCP4 [Ricinus communis][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005333Transcription_factor_TCP
IPR017887TF_TCP_subgr
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048513 animal organ development
biological_process GO:0009058 biosynthetic process
biological_process GO:0044702 single organism reproductive process
biological_process GO:0044802 single-organism membrane organization
biological_process GO:0007165 signal transduction
biological_process GO:0051707 response to other organism
biological_process GO:0009725 response to hormone
biological_process GO:0048608 reproductive structure development
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0031347 regulation of defense response
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0009791 post-embryonic development
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0048366 leaf development
biological_process GO:0045087 innate immune response
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0006464 cellular protein modification process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C014426MELO3C014426gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C014426T1MELO3C014426T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C014426T1.cds1MELO3C014426T1.cds1CDS


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 22..61
score: 9.
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 20..61
score: 1
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 8..60
score: 5.4
NoneNo IPR availablePANTHERPTHR31072:SF13SUBFAMILY NOT NAMEDcoord: 8..60
score: 5.4