MELO3C018937T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018937T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Rhomboid family protein
Location	chr7 : 13681612 .. 13685060 (-)
Sequence length	1898

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGGAAGCCTCTTCTCAACTCCGAAAACCTAACCTACCCTCCAAATATATATTCTTCCCTTTTCTTCATTAGCTCAAATATACGCTCAAAGGTTCAAATCATGGCTGTTCCCACTTTTTTCCAAATAAGAAACTTTAACGACTTGCTTAATCCAACGCAAACGATTTCCAAGCCTAATAAGAGAGTATGTATTTGCAAATGCGATGTTGTGGTTTCAAAGAATAATCTACCAATTTTGGTCACCTACTCCAAACATCATAATTGGGAAATACATAATAATGATTCATCTGTCGTCAAAATCTCGACGAGAGCGAGGAAGTCGATAGGAGGGTTGAAAGCATTATTGCAACATGTGAGATGTAGTAATGGTTTGAATTTTGAGTACTCAAAAGTATTAGAAAAATTAAGTCAGGTTTGGAAGTGTACTACCAATGAGAAACAATTGAGATCATTGGGTTCTTATTTTGGAAGACTTCAAGGTCTTGGGGATAAGAAAAATTTAGATTCTTTAAAGAAGATGAAAGTTCTTGATACAGGTCAGTTCAAAGCAAAGAAGGAGCTTCAATTGCTTGATGCTTATTTTCAAAAAGTTGATAAAGGTAAACTCTTTTGGATCCAAATTCATTTATATGTTATTGTTCTATTTTTAATGATTTATCTCTCTAAACTAGTATAGATAGATATTAGCGTTTCAATCCTCCTTAAATTCAAAAGTTTAAGTAGATAAATTATTGTAAGTTTAAATATCTATATATTATATCATGAATTCATTGTATTTATATTAGTTAAAATACGTAAATCCACTTTTGGTTTTTAGCTTTTTTCTTGTGTAGTTTCAAGTATTTTATTTTATTCCAATTTTTAAAAAGAAAATTATCATTTAATTTTCTATAGTTGACTAGTTCGCGTAGAATTGACCTTTTAAAACATTATTAAATCTATGCATACAGTAAATTCGTTCATGTAGATTACTACTTTTAGATAAATGAATGAAAATGCCTATATATGTATGTATATCAGATTTTTTTTCTTTTTGGGGAATATAGTGCCCCTATATATATCAGATATTTTGTTTAAGGGTTATGACAAATGGAAGTTTCTTTTTCTTTTTTTGAGTTCTTACTTTACGCAAGTTGGTTGGGAGAGATTCTGTCCTTCTAGTCGGTATAGTTCTTACTTTATGCAAGTTGAGATAACAACTTTAATTAATGTTTTTTTTTATAAATGCAAATGTCAGTCATAAAAACTAGTTAAAAGTTCATAATAATCCAAAAAATAGAACCAACATAGAAACCTTTAAATCATTTAATATCGTAGCAATTTGTAGCCATTTCAGAATTTGATATCTATAGCAGATACAGATTTGCACAAACATCCTCTATCTAGTTTTGATGATCAACAAGAAGGCAAATTGGTGTTCACAACATCTCCTTTCGAAGATTATGTTAAAGATGACGACAAGTCGCAAATACAACACGTGAAACTGAGCGGTATGACTCACAAAAGCATGCCAGACACAACTCAACTACAAGAAGAAGAAGTTTGTGATCTCTATTTGATGTAAGGTTCATAGTTACGATTAATTGAACGAAAACCAATGATTTTCTATAAGAAAAATACGTTTTATAAGTCATCCCAAATTCATATTTATTAATGTTTGATGCAGAATATATGTTCTAATAGGTTGCTTTTGGAAATATATATATGCAGAAGCGCTTTGGTATCCATAAATATAGCAGTTTTCTTATTTGAAATAGCAAGTCCAGTAAAAAACTCGGAACTACAACTCTTTTCACTTCCTTCTCTGTATGGAGCAAAGATCAATGAGCTGATTCTAGTAGGAGAATGGTGGAGGCTTGTTACACCTATGTTTCTGGTACAACATTGATATAACTCGGTTCGTGTTTCCATTCTATAACTGTTTTCGACATTTTATTCCATTGTCTTTCAAAAAGCGTCAATTTAAACATAGTTTAATTAAAAGTTTTCTCGATTTGGGCATTGAAATAATTTCTTTTGAATGTACTAAAATAATGCCTTGCCTATATTAACCTTTTTATAAATGCAGCATTCAGGGGTTCTTCATGTTGCTCTCAGTTGTTGGACACTTCTTACATTTGGCCGCCAAGTTTGTAGAAAATATGGTCCTTTTACATTTTTCTTGATCTATGTCTTAGGAGGAGTTTCTGGTAATCTCACAAGCTTTCTTCATACTCCTAATCCAACTGTGGGTGGGACGGTAAGCTAGCTCAAACATTTACGAAACAAAACGATGATACATTTATTGAGATGTTTATCGTTTAATGTGAACTATATATTGCACCCTTGGAGCAGGGGCCAGTGTTTGCAATGATTGGAGCTTGGCTTAGTTACCAATTCCAGAACAAAGATGTTGTGACAAAGGATGTTTCAGACAAGATGTTTTTGAAAGCATTAGTTGCAGCTGTCATAAGTTCCATTTTAAGCAATATTGGTCCCATTGATGAATGGTGAGTTAAGAAAATTTCTCATTTGAAGCAACAAAAAAAACATGCCTTACTTTTCCCTCTCCCTAGACGACTTTATAGGGTTACTAAATTGGTTATACTATAGTCCGTAGGGTTAAAATAATATTTGTTTGGTACGAGTCCTTGCTATTATATAATTTGTGTATTCGGGTATTACTATACATAAAAATAGTAAAATACTATAATAAATAATAAAATAGTAAACCATTGCAACAAAAAGAGATTAAAAATAACATAATAATATTGTTGTTAGTTATACCGTAGATTATTATAATAGCGAGGAATACCAACTATTATATGAGTTATAATACCTCATTCTATTCACTAAAAGTTGAGGGTCCAAACACTCGTACTTTTATACATCGGCAACTAAGAAACTAACAATGAAAAAGAAAAGGTATTTTTTAAATTGTTTCAAGGCTTGTGAAGAGAAATATGAGCAAGCATTATAAGTTTAAAGCATAAAAATGAGATAATAATGATAATGTAGAAATGTTTGGTTAATTTGGTGGTGTGTTGTAAATAATTGTAGGACTCACACAGGAGCAGCTTTTAGTGGGATGTTATATGGGTTTCTAACATCCCCACTTGGGAAGGTCAATGATGCTTCTTCTTCATCAAGAAGAGGCCAAGAAAAGGGAATAAAGGTCGTTAGGAAATATGCTAATCCTTGCAAATCATTTGCTTTTTTTGTTCTTTTCATTATGGGATTCATAAGTTTGGTGTTCTTTGTCCAACCTCCCTTCCACCACTTCGGACTTTTGAGTGTTATTCAACTTTAATTTAATTTAGTTGCGGTTTATTGAGAAGAAAATATTGTATGTATTGTCAAAATATTATATGTGTCTCTCTAGAGTGTGGTTTGCAAGGGCTTGATATACAGTCAAAAGTTCCATATGCCTCTCATTTAAGTTTTAATTTACAATTTTGTCTCACTTTTA

mRNA sequence

AGTGGAAGCCTCTTCTCAACTCCGAAAACCTAACCTACCCTCCAAATATATATTCTTCCCTTTTCTTCATTAGCTCAAATATACGCTCAAAGGTTCAAATCATGGCTGTTCCCACTTTTTTCCAAATAAGAAACTTTAACGACTTGCTTAATCCAACGCAAACGATTTCCAAGCCTAATAAGAGAGTATGTATTTGCAAATGCGATGTTGTGGTTTCAAAGAATAATCTACCAATTTTGGTCACCTACTCCAAACATCATAATTGGGAAATACATAATAATGATTCATCTGTCGTCAAAATCTCGACGAGAGCGAGGAAGTCGATAGGAGGGTTGAAAGCATTATTGCAACATGTGAGATGTAGTAATGGTTTGAATTTTGAGTACTCAAAAGTATTAGAAAAATTAAGTCAGGTTTGGAAGTGTACTACCAATGAGAAACAATTGAGATCATTGGGTTCTTATTTTGGAAGACTTCAAGGTCTTGGGGATAAGAAAAATTTAGATTCTTTAAAGAAGATGAAAGTTCTTGATACAGGTCAGTTCAAAGCAAAGAAGGAGCTTCAATTGCTTGATGCTTATTTTCAAAAAGTTGATAAAGATACAGATTTGCACAAACATCCTCTATCTAGTTTTGATGATCAACAAGAAGGCAAATTGGTGTTCACAACATCTCCTTTCGAAGATTATGTTAAAGATGACGACAAGTCGCAAATACAACACGTGAAACTGAGCGGTATGACTCACAAAAGCATGCCAGACACAACTCAACTACAAGAAGAAGAAGTTTGTGATCTCTATTTGATAAGCGCTTTGGTATCCATAAATATAGCAGTTTTCTTATTTGAAATAGCAAGTCCAGTAAAAAACTCGGAACTACAACTCTTTTCACTTCCTTCTCTGTATGGAGCAAAGATCAATGAGCTGATTCTAGTAGGAGAATGGTGGAGGCTTGTTACACCTATGTTTCTGGTACAACATTGATATAACTCGGTTCGTGTTTCCATTCTATAACTGTTTTCGACATTTTATTCCATTGTCTTTCAAAAAGCGTCAATTTAAACATAGTTTAATTAAAAGTTTTCTCGATTTGGGCATTGAAATAATTTCTTTTGAATGTACTAAAATAATGCCTTGCCTATATTAACCTTTTTATAAATGCAGCATTCAGGGGTTCTTCATGTTGCTCTCAGTTGTTGGACACTTCTTACATTTGGCCGCCAAGTTTGTAGAAAATATGGTCCTTTTACATTTTTCTTGATCTATGTCTTAGGAGGAGTTTCTGGTAATCTCACAAGCTTTCTTCATACTCCTAATCCAACTGTGGGTGGGACGGGGCCAGTGTTTGCAATGATTGGAGCTTGGCTTAGTTACCAATTCCAGAACAAAGATGTTGTGACAAAGGATGTTTCAGACAAGATGTTTTTGAAAGCATTAGTTGCAGCTGTCATAAGTTCCATTTTAAGCAATATTGGTCCCATTGATGAATGGACTCACACAGGAGCAGCTTTTAGTGGGATGTTATATGGGTTTCTAACATCCCCACTTGGGAAGGTCAATGATGCTTCTTCTTCATCAAGAAGAGGCCAAGAAAAGGGAATAAAGGTCGTTAGGAAATATGCTAATCCTTGCAAATCATTTGCTTTTTTTGTTCTTTTCATTATGGGATTCATAAGTTTGGTGTTCTTTGTCCAACCTCCCTTCCACCACTTCGGACTTTTGAGTGTTATTCAACTTTAATTTAATTTAGTTGCGGTTTATTGAGAAGAAAATATTGTATGTATTGTCAAAATATTATATGTGTCTCTCTAGAGTGTGGTTTGCAAGGGCTTGATATACAGTCAAAAGTTCCATATGCCTCTCATTTAAGTTTTAATTTACAATTTTGTCTCACTTTTA

Coding sequence (CDS)

ATGGCTGTTCCCACTTTTTTCCAAATAAGAAACTTTAACGACTTGCTTAATCCAACGCAAACGATTTCCAAGCCTAATAAGAGAGTATGTATTTGCAAATGCGATGTTGTGGTTTCAAAGAATAATCTACCAATTTTGGTCACCTACTCCAAACATCATAATTGGGAAATACATAATAATGATTCATCTGTCGTCAAAATCTCGACGAGAGCGAGGAAGTCGATAGGAGGGTTGAAAGCATTATTGCAACATGTGAGATGTAGTAATGGTTTGAATTTTGAGTACTCAAAAGTATTAGAAAAATTAAGTCAGGTTTGGAAGTGTACTACCAATGAGAAACAATTGAGATCATTGGGTTCTTATTTTGGAAGACTTCAAGGTCTTGGGGATAAGAAAAATTTAGATTCTTTAAAGAAGATGAAAGTTCTTGATACAGGTCAGTTCAAAGCAAAGAAGGAGCTTCAATTGCTTGATGCTTATTTTCAAAAAGTTGATAAAGATACAGATTTGCACAAACATCCTCTATCTAGTTTTGATGATCAACAAGAAGGCAAATTGGTGTTCACAACATCTCCTTTCGAAGATTATGTTAAAGATGACGACAAGTCGCAAATACAACACGTGAAACTGAGCGGTATGACTCACAAAAGCATGCCAGACACAACTCAACTACAAGAAGAAGAAGTTTGTGATCTCTATTTGATAAGCGCTTTGGTATCCATAAATATAGCAGTTTTCTTATTTGAAATAGCAAGTCCAGTAAAAAACTCGGAACTACAACTCTTTTCACTTCCTTCTCTGTATGGAGCAAAGATCAATGAGCTGATTCTAGTAGGAGAATGGTGGAGGCTTGTTACACCTATGTTTCTGGTACAACATTGA

Protein sequence

MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNNDSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGSYFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDDQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVSINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFLVQH*

Homology

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BLAST of MELO3C018937T2 vs. Swiss-Prot
Match: RBL9_ARATH (RHOMBOID-like protein 9, chloroplastic OS=Arabidopsis thaliana GN=RBL9 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.9e-23
Identity = 67/182 (36.81%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 112 EKQLRSLGSYFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLH 171
           +++L+ L SYFG+LQ   +K ++ +   +      +    +EL  L AY  K+ KD    
Sbjct: 77  KQRLKLLDSYFGKLQNDDEKPSISTGDDID--RKAELNVNEELDSLSAYLDKLQKDA--- 136

Query: 172 KHPLSSFDDQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTT---QLQEEE 231
                    + +G +  T     D VK +  S    ++ +G+ + + P      + Q E+
Sbjct: 137 ---------KSKGLVSSTL----DVVKSEGGSVASKLRKTGIENNNSPFQQFDDEDQAED 196

Query: 232 VCDLYLISALVSINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 291
             + Y +S L SIN+ V LFE A+PV+N+ + L SLP LYGAKIN+LIL GEWWRLVTPM
Sbjct: 197 TLNFYAVSILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPM 240

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BLAST of MELO3C018937T2 vs. TrEMBL
Match: A0A0A0L0I7_CUCSA (Rhomboid-like protein OS=Cucumis sativus GN=Csa_4G094530 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 6.7e-134
Identity = 247/288 (85.76%), Postives = 264/288 (91.67%), Query Frame = 1


Query: 3   VPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNNDS 62
           VPTFFQIRNFN      +TISKPNKRVC+CK DVVVSK+NLP  V+YSKHH WEIH+NDS
Sbjct: 4   VPTFFQIRNFN------ETISKPNKRVCVCKWDVVVSKDNLPTFVSYSKHHTWEIHDNDS 63

Query: 63  SVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGSYF 122
           SVV ISTRARKS  GLKALL HVRCSNGL+FE+SKV EKLSQVW+C+TNEKQLRSLGSYF
Sbjct: 64  SVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQLRSLGSYF 123

Query: 123 GRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDDQQ 182
           GRLQG+GD+KNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK   LHKHPLSSFD+Q+
Sbjct: 124 GRLQGVGDRKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK--GLHKHPLSSFDEQE 183

Query: 183 EGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVSIN 242
           EGKLVFTTSP ED VKDD+  QI+HVKLSGM HKSMP+ TQLQEEEVCDLYLISALVSIN
Sbjct: 184 EGKLVFTTSPSEDRVKDDE-LQIRHVKLSGMIHKSMPNKTQLQEEEVCDLYLISALVSIN 243

Query: 243 IAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           IAVFLFE+ASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 244 IAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 282

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BLAST of MELO3C018937T2 vs. TrEMBL
Match: W9SBA5_9ROSA (Rhomboid-like protein OS=Morus notabilis GN=L484_008664 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 96/206 (46.60%), Postives = 129/206 (62.62%), Query Frame = 1


Query: 99  LEKLSQVWKCT---TNEKQLRSLGSYFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQ 158
           ++  S+VW  +   TN+KQL SL SYFG+L+   D K+L++ +      T Q  +KK L+
Sbjct: 24  IDSQSRVWCASDSNTNDKQLSSLSSYFGKLKD--DNKSLNTSESSVQSSTNQLSSKKRLE 83

Query: 159 LLDAYFQKVDKDTDLHKHPL-------SSFDDQQEGKLVFTTSPFEDYVKDDDKSQIQHV 218
           +LDAY  K+DKD DL +          SS  D+   K    + PF  ++  + +   +  
Sbjct: 84  ILDAYLDKLDKDADLEEDSANIVEPTTSSSFDEDSVKDSAVSEPF--FISKESERGKEAK 143

Query: 219 KLSGMTHKSM--PDTTQL--QEEEVCDLYLISALVSINIAVFLFEIASPVKNSELQLFSL 278
             S M  +S   P ++Q+  Q++E  DLYLIS L SINIAV LFEIASPV+NSEL+L SL
Sbjct: 144 TTSNMNQRSQNSPKSSQMLQQDDETSDLYLISILASINIAVILFEIASPVRNSELELSSL 203

Query: 279 PSLYGAKINELILVGEWWRLVTPMFL 291
           P LYGAK+N +ILVGEWWRLVTPMFL
Sbjct: 204 PLLYGAKVNHMILVGEWWRLVTPMFL 225

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BLAST of MELO3C018937T2 vs. TrEMBL
Match: U5FPF7_POPTR (Rhomboid-like protein OS=Populus trichocarpa GN=POPTR_0017s13870g PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 110/284 (38.73%), Postives = 158/284 (55.63%), Query Frame = 1


Query: 23  SKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWE-IHNNDSSVVKISTRARKSIGGLKAL 82
           ++ ++R  +C C       +  + ++     NW  I+     +VK+ TR R +      L
Sbjct: 26  ARQHERGLLCACSAFAQGGSY-LSISSDVQRNWPVIYTTADVLVKVKTRGRTNASKGTIL 85

Query: 83  LQHV-RCSNGLNFEYSKVLEKLSQ--------VWKCTTNEKQLRSLGSYFGRLQGLGDKK 142
            Q + +  + ++  +   + + S+          K  TNEKQLR L SYFG+LQ    + 
Sbjct: 86  NQGLLKFQSVMDVPHLHKIHRTSRENLSVACCASKSGTNEKQLRLLDSYFGKLQDNVSEP 145

Query: 143 NLDSL-KKMKVLDTG-QFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDDQ--QEGKLVF 202
           + DS  ++   LDT  Q   K+EL+ L+AY  KVDKD +L  + LS+F+D+  +E  +V 
Sbjct: 146 SSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVDKDANLENNVLSTFNDEATEENPIVK 205

Query: 203 TTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEE--EVCDLYLISALVSINIAVF 262
             S  ++  +D+++       L     +S    ++  E+  E    YLI  L SINIAVF
Sbjct: 206 PISVSKESRRDNEERLRSFRNLRNQYVESGSRRSEALEQNYETSYFYLIGTLASINIAVF 265

Query: 263 LFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           LFEIASPV+NSE  LFSLP LYGAKINELILVGEWWRLVTPMFL
Sbjct: 266 LFEIASPVRNSEFALFSLPLLYGAKINELILVGEWWRLVTPMFL 308

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BLAST of MELO3C018937T2 vs. TrEMBL
Match: B9RSM3_RICCO (Rhomboid-like protein OS=Ricinus communis GN=RCOM_1727230 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 93/194 (47.94%), Postives = 127/194 (65.46%), Query Frame = 1


Query: 103 SQVWKCTTNEKQLRSLGSYFGRLQGLGDKKNLDSLKKMKVLD--TGQFKAKKELQLLDAY 162
           S   K + NEKQLR L SYFG+LQG  ++ + DS  +   L   + +    +ELQ L++Y
Sbjct: 43  SHASKTSINEKQLRLLDSYFGKLQGDANQPSTDSSDETTKLGNKSKEINPTEELQSLNSY 102

Query: 163 FQKVDKDTDLHKHPLSSFDD--QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGM-THKS 222
             K+ KD++L  +  S+ DD   +  KLV   S +ED  + +++     VKL     ++ 
Sbjct: 103 LDKLSKDSNLENYVSSTSDDLTTESEKLV---SVYEDSKRGEEEKPKSFVKLREKDANRG 162

Query: 223 MPDTTQLQE-EEVCDLYLISALVSINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELI 282
           +  +  LQ+ +E  DLYL S LVSINIAVFLFE+ASPV+NSE +LF+LP LYGAKIN+LI
Sbjct: 163 LRRSQALQQNDETSDLYLTSILVSINIAVFLFELASPVRNSEFELFTLPLLYGAKINDLI 222

Query: 283 LVGEWWRLVTPMFL 291
           LVGEWWRL+TPMFL
Sbjct: 223 LVGEWWRLLTPMFL 233

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BLAST of MELO3C018937T2 vs. TrEMBL
Match: A5C9C2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003619 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.9e-34
Identity = 102/232 (43.97%), Postives = 135/232 (58.19%), Query Frame = 1


Query: 70  RARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCT---TNEKQLRSLGSYFGRLQ 129
           R R  + GL  +     C   ++ E +   E L  VW  +   TNEKQLR L  YFG+L 
Sbjct: 71  RHRTELHGLHRMSYTESCLRSIS-ENASQRENLGTVWSASESSTNEKQLRLLDLYFGKLH 130

Query: 130 GLGDKKNLDSL-KKMKVLD-TGQFKAKKELQLLDAYFQKVDKDTDLHKH-PLSSFDDQQE 189
              D  +L S  KK +++D +GQFK K+ L+ L+ +  K++KD     + P S  D   E
Sbjct: 131 NEDDGSSLHSSDKKTELMDQSGQFKPKEGLRSLEDHLGKINKDATSENYLPSSPCDKIDE 190

Query: 190 GKLVFTTSPF---EDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQE--EEVCDLYLISAL 249
            K      PF   ED    D+     + +L      S P  ++ Q+  +E  DLYLIS L
Sbjct: 191 DK--HDIEPFSITEDVNPVDEGKLKSYAELRNKDGDSGPKNSREQQPYDETSDLYLISIL 250

Query: 250 VSINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           VSINIAV LFE+ASP++NS+L+L SLP +YGAKIN+LILVGEWWRLVTPMFL
Sbjct: 251 VSINIAVVLFELASPIRNSDLELSSLPLMYGAKINDLILVGEWWRLVTPMFL 299

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BLAST of MELO3C018937T2 vs. TAIR10
Match: AT5G38510.1 (AT5G38510.1 Rhomboid-related intramembrane serine protease family protein)

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-24
Identity = 67/182 (36.81%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 112 EKQLRSLGSYFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLH 171
           +++L+ L SYFG+LQ   +K ++ +   +      +    +EL  L AY  K+ KD    
Sbjct: 77  KQRLKLLDSYFGKLQNDDEKPSISTGDDID--RKAELNVNEELDSLSAYLDKLQKDA--- 136

Query: 172 KHPLSSFDDQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTT---QLQEEE 231
                    + +G +  T     D VK +  S    ++ +G+ + + P      + Q E+
Sbjct: 137 ---------KSKGLVSSTL----DVVKSEGGSVASKLRKTGIENNNSPFQQFDDEDQAED 196

Query: 232 VCDLYLISALVSINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPM 291
             + Y +S L SIN+ V LFE A+PV+N+ + L SLP LYGAKIN+LIL GEWWRLVTPM
Sbjct: 197 TLNFYAVSILASINVGVCLFEAAAPVRNNNMGLLSLPLLYGAKINDLILAGEWWRLVTPM 240

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BLAST of MELO3C018937T2 vs. NCBI nr
Match: gi|659111114|ref|XP_008455584.1| (PREDICTED: uncharacterized protein LOC103495725 isoform X2 [Cucumis melo])

HSP 1 Score: 585.9 bits (1509), Expect = 4.0e-164
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1


Query: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60
           MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN
Sbjct: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60

Query: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120
           DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS
Sbjct: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120

Query: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDD 180
           YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDD
Sbjct: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDD 180

Query: 181 QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS 240
           QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS
Sbjct: 181 QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS 240

Query: 241 INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 241 INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 290

[Close]

BLAST of MELO3C018937T2 vs. NCBI nr
Match: gi|659111112|ref|XP_008455583.1| (PREDICTED: uncharacterized protein LOC103495725 isoform X1 [Cucumis melo])

HSP 1 Score: 581.3 bits (1497), Expect = 9.8e-163
Identity = 290/291 (99.66%), Postives = 290/291 (99.66%), Query Frame = 1


Query: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60
           MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN
Sbjct: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60

Query: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120
           DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS
Sbjct: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120

Query: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK-DTDLHKHPLSSFD 180
           YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK DTDLHKHPLSSFD
Sbjct: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKADTDLHKHPLSSFD 180

Query: 181 DQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALV 240
           DQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALV
Sbjct: 181 DQQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALV 240

Query: 241 SINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           SINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 241 SINIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291

[Close]

BLAST of MELO3C018937T2 vs. NCBI nr
Match: gi|659111116|ref|XP_008455585.1| (PREDICTED: uncharacterized protein LOC103495725 isoform X3 [Cucumis melo])

HSP 1 Score: 576.6 bits (1485), Expect = 2.4e-161
Identity = 288/290 (99.31%), Postives = 288/290 (99.31%), Query Frame = 1


Query: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60
           MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN
Sbjct: 1   MAVPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNN 60

Query: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120
           DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS
Sbjct: 61  DSSVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGS 120

Query: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDD 180
           YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK  DLHKHPLSSFDD
Sbjct: 121 YFGRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK--DLHKHPLSSFDD 180

Query: 181 QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS 240
           QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS
Sbjct: 181 QQEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVS 240

Query: 241 INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 241 INIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 288

[Close]

BLAST of MELO3C018937T2 vs. NCBI nr
Match: gi|778691757|ref|XP_004137292.2| (PREDICTED: uncharacterized protein LOC101206746 isoform X2 [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 1.6e-136
Identity = 249/288 (86.46%), Postives = 266/288 (92.36%), Query Frame = 1


Query: 3   VPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNNDS 62
           VPTFFQIRNFN      +TISKPNKRVC+CK DVVVSK+NLP  V+YSKHH WEIH+NDS
Sbjct: 5   VPTFFQIRNFN------ETISKPNKRVCVCKWDVVVSKDNLPTFVSYSKHHTWEIHDNDS 64

Query: 63  SVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGSYF 122
           SVV ISTRARKS  GLKALL HVRCSNGL+FE+SKV EKLSQVW+C+TNEKQLRSLGSYF
Sbjct: 65  SVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQLRSLGSYF 124

Query: 123 GRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTDLHKHPLSSFDDQQ 182
           GRLQG+GD+KNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDT LHKHPLSSFD+Q+
Sbjct: 125 GRLQGVGDRKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKDTGLHKHPLSSFDEQE 184

Query: 183 EGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVSIN 242
           EGKLVFTTSP ED VKDD+  QI+HVKLSGM HKSMP+ TQLQEEEVCDLYLISALVSIN
Sbjct: 185 EGKLVFTTSPSEDRVKDDE-LQIRHVKLSGMIHKSMPNKTQLQEEEVCDLYLISALVSIN 244

Query: 243 IAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           IAVFLFE+ASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 245 IAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 285

[Close]

BLAST of MELO3C018937T2 vs. NCBI nr
Match: gi|778691755|ref|XP_011653344.1| (PREDICTED: uncharacterized protein LOC101206746 isoform X1 [Cucumis sativus])

HSP 1 Score: 489.6 bits (1259), Expect = 3.9e-135
Identity = 249/289 (86.16%), Postives = 266/289 (92.04%), Query Frame = 1


Query: 3   VPTFFQIRNFNDLLNPTQTISKPNKRVCICKCDVVVSKNNLPILVTYSKHHNWEIHNNDS 62
           VPTFFQIRNFN      +TISKPNKRVC+CK DVVVSK+NLP  V+YSKHH WEIH+NDS
Sbjct: 5   VPTFFQIRNFN------ETISKPNKRVCVCKWDVVVSKDNLPTFVSYSKHHTWEIHDNDS 64

Query: 63  SVVKISTRARKSIGGLKALLQHVRCSNGLNFEYSKVLEKLSQVWKCTTNEKQLRSLGSYF 122
           SVV ISTRARKS  GLKALL HVRCSNGL+FE+SKV EKLSQVW+C+TNEKQLRSLGSYF
Sbjct: 65  SVVTISTRARKSRRGLKALLHHVRCSNGLDFEHSKVSEKLSQVWECSTNEKQLRSLGSYF 124

Query: 123 GRLQGLGDKKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK-DTDLHKHPLSSFDDQ 182
           GRLQG+GD+KNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDK DT LHKHPLSSFD+Q
Sbjct: 125 GRLQGVGDRKNLDSLKKMKVLDTGQFKAKKELQLLDAYFQKVDKADTGLHKHPLSSFDEQ 184

Query: 183 QEGKLVFTTSPFEDYVKDDDKSQIQHVKLSGMTHKSMPDTTQLQEEEVCDLYLISALVSI 242
           +EGKLVFTTSP ED VKDD+  QI+HVKLSGM HKSMP+ TQLQEEEVCDLYLISALVSI
Sbjct: 185 EEGKLVFTTSPSEDRVKDDE-LQIRHVKLSGMIHKSMPNKTQLQEEEVCDLYLISALVSI 244

Query: 243 NIAVFLFEIASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 291
           NIAVFLFE+ASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL
Sbjct: 245 NIAVFLFEVASPVKNSELQLFSLPSLYGAKINELILVGEWWRLVTPMFL 286

The following BLAST results are available for this feature:

BLAST of MELO3C018937T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL9_ARATH	8.9e-23	36.81	RHOMBOID-like protein 9, chloroplastic OS=Arabidopsis thaliana GN=RBL9 PE=2 SV=1	[more]

BLAST of MELO3C018937T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0I7_CUCSA	6.7e-134	85.76	Rhomboid-like protein OS=Cucumis sativus GN=Csa_4G094530 PE=3 SV=1	[more]
W9SBA5_9ROSA	2.2e-36	46.60	Rhomboid-like protein OS=Morus notabilis GN=L484_008664 PE=3 SV=1	[more]
U5FPF7_POPTR	2.9e-36	38.73	Rhomboid-like protein OS=Populus trichocarpa GN=POPTR_0017s13870g PE=3 SV=1	[more]
B9RSM3_RICCO	1.6e-34	47.94	Rhomboid-like protein OS=Ricinus communis GN=RCOM_1727230 PE=3 SV=1	[more]
A5C9C2_VITVI	7.9e-34	43.97	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003619 PE=4 SV=1	[more]

BLAST of MELO3C018937T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38510.1	5.0e-24	36.81	Rhomboid-related intramembrane serine protease family protein	[more]

BLAST of MELO3C018937T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111114\|ref\|XP_008455584.1\|	4.0e-164	100.00	PREDICTED: uncharacterized protein LOC103495725 isoform X2 [Cucumis melo]	[more]
gi\|659111112\|ref\|XP_008455583.1\|	9.8e-163	99.66	PREDICTED: uncharacterized protein LOC103495725 isoform X1 [Cucumis melo]	[more]
gi\|659111116\|ref\|XP_008455585.1\|	2.4e-161	99.31	PREDICTED: uncharacterized protein LOC103495725 isoform X3 [Cucumis melo]	[more]
gi\|778691757\|ref\|XP_004137292.2\|	1.6e-136	86.46	PREDICTED: uncharacterized protein LOC101206746 isoform X2 [Cucumis sativus]	[more]
gi\|778691755\|ref\|XP_011653344.1\|	3.9e-135	86.16	PREDICTED: uncharacterized protein LOC101206746 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002610	Peptidase_S54_rhomboid

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018937	MELO3C018937	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018937T2	MELO3C018937T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018937T2.cds3	MELO3C018937T2.cds3	CDS
MELO3C018937T2.cds2	MELO3C018937T2.cds2	CDS
MELO3C018937T2.cds1	MELO3C018937T2.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002610	Peptidase S54, rhomboid	PANTHER	PTHR22936	RHOMBOID-RELATED	coord: 232..290 score: 1.2
None	No IPR available	PANTHER	PTHR22936:SF4	RHOMBOID FAMILY PROTEIN	coord: 232..290 score: 1.2
None	No IPR available	unknown	SSF144091	Rhomboid-like	coord: 234..290 score: 6.5