Cla022066.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022066
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA polymerase (AHRD V1 ***- F6GW32_VITVI)
Location	Chr8 : 20066234 .. 20066704 (+)
Sequence length	471

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

mRNA sequence

ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

Coding sequence (CDS)

ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

Protein sequence

MLEGRLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFSMEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHLNASSWCSLSKAFKDFSIQDININWKAFIFPPP

Homology

[Close]

BLAST of Cla022066 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 36  KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 95

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 96  RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 155

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 156 LASLWAFCSKVFKGIPLNMLQLDWLA 181

[Close]

BLAST of Cla022066 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1718 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1777

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1778 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 1837

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1838 LASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]

BLAST of Cla022066 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1


Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 536 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 595

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A+   +W ERN R+F + A +    +++   
Sbjct: 596 RSISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRF 655

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 656 LASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]

BLAST of Cla022066 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1158 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1217

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1218 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICF 1277

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1278 LASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]

BLAST of Cla022066 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-14
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            ++N   +LQ + P   LSP +C LC+E  E + HLF  C      W RLF    + WV  
Sbjct: 1782 KVNTNDMLQLRRPYKALSPDICMLCMEQGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 1841

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                + +     G        +LW  A  AIL  +W ERN R+F + + +    ++  H 
Sbjct: 1842 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHF 1901

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W S SK FK   +  I+++W A
Sbjct: 1902 LASLWVSCSKVFKGIPLNVIHLDWLA 1927

[Close]

BLAST of Cla022066 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1718 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1777

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1778 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 1837

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1838 LASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]

BLAST of Cla022066 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-14
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1


Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 536 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 595

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A+   +W ERN R+F + A +    +++   
Sbjct: 596 RSISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRF 655

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 656 LASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]

BLAST of Cla022066 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1158 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1217

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1218 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICF 1277

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1278 LASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]

BLAST of Cla022066 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 9.0e-14
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            ++N   +LQ + P   LSP +C LC+E  E + HLF  C      W RLF    + WV  
Sbjct: 1782 KVNTNDMLQLRRPYKALSPDICMLCMEQGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 1841

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                + +     G        +LW  A  AIL  +W ERN R+F + + +    ++  H 
Sbjct: 1842 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHF 1901

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W S SK FK   +  I+++W A
Sbjct: 1902 LASLWVSCSKVFKGIPLNVIHLDWLA 1927

[Close]

BLAST of Cla022066 vs. NCBI nr
Match: gi|147811390|emb|CAN65485.1| (hypothetical protein VITISV_029475 [Vitis vinifera])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1


Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           ++N   +LQ K P   LSP +C LC++  E + HLF  C      W+RLF      WV  
Sbjct: 56  KVNTNDLLQLKRPHKALSPDICKLCMKHGETVDHLFLHCSLMMGLWYRLFQLAKTDWVPP 115

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               + +     G +      +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 116 RSISDMLSTNFNGFESSKRGIVLWQDACIALMWVVWXERNARIFEDKARNSEYLWDSISF 175

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 176 LASLWALCSKVFKGIPLNVLQLDWLA 201

The following BLAST results are available for this feature:

BLAST of Cla022066 vs. TrEMBL


Match Name	E-value	Identity	Description
F6H108_VITVI	1.6e-14	30.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=...	[more]
A5C377_VITVI	1.6e-14	30.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1	[more]
A5BKH7_VITVI	3.7e-14	30.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1	[more]
A5BTG1_VITVI	3.7e-14	30.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1	[more]
A5BQD9_VITVI	6.3e-14	32.19	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1	[more]

BLAST of Cla022066 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147802674\|emb\|CAN62051.1\|	2.4e-14	30.14	hypothetical protein VITISV_016641 [Vitis vinifera]	[more]
gi\|147792407\|emb\|CAN63585.1\|	5.3e-14	30.14	hypothetical protein VITISV_026806 [Vitis vinifera]	[more]
gi\|147815645\|emb\|CAN61757.1\|	5.3e-14	30.14	hypothetical protein VITISV_030741 [Vitis vinifera]	[more]
gi\|147857332\|emb\|CAN79190.1\|	9.0e-14	32.19	hypothetical protein VITISV_000232 [Vitis vinifera]	[more]
gi\|147811390\|emb\|CAN65485.1\|	1.5e-13	29.45	hypothetical protein VITISV_029475 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla022066	Cla022066	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla022066	Cla022066.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla022066.1.cds1	Cla022066.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 2..50 score: 1.