Cla022066 (gene) Watermelon (97103) v1

Overview
NameCla022066
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA polymerase (AHRD V1 ***- F6GW32_VITVI)
LocationChr8 : 20066234 .. 20066704 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

mRNA sequence

ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

Coding sequence (CDS)

ATGCTAGAGGGGCGGTTAAACTGTGCTTCGGTGCTGCAATCAAAGCTGCCTTCTCATTGCCTTTCACCTCATGTTTGTCACCTTTGCTTGGAAGATCACGAGGACTTGCAGCACCTTTTCTTCGGCTGTAAATTCGCCAAAAACTGCTGGTTCAGGCTGTTTGACAGCTTTAATTTAAGCTGGGTGTTCAGTATGGAGTTCAAGGAAAATGTCCTACGGTTGCTGCTCGGACCCAAGCTAAAATTAACTCCAAAACTGCTTTGGATTAATGCTGTCAAAGCTATCTTATCAGAAATCTGGTTTGAAAGGAATCAGAGGGTGTTTCACAATATTGCTTCCTCTTGGTCGATTAGATTTGAGACAACTCATTTAAATGCTTCCTCATGGTGCTCTCTTTCCAAGGCATTTAAAGACTTCTCCATCCAAGACATCAACATTAATTGGAAGGCTTTTATATTCCCCCCTCCCTAG

Protein sequence

MLEGRLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFSMEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHLNASSWCSLSKAFKDFSIQDININWKAFIFPPP
Homology
[Close]
BLAST of Cla022066 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 36  KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 95

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 96  RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 155

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 156 LASLWAFCSKVFKGIPLNMLQLDWLA 181

[Close]
BLAST of Cla022066 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1718 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1777

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1778 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 1837

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1838 LASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]
BLAST of Cla022066 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1 

Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 536 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 595

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A+   +W ERN R+F + A +    +++   
Sbjct: 596 RSISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRF 655

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 656 LASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]
BLAST of Cla022066 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1158 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1217

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1218 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICF 1277

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1278 LASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]
BLAST of Cla022066 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-14
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            ++N   +LQ + P   LSP +C LC+E  E + HLF  C      W RLF    + WV  
Sbjct: 1782 KVNTNDMLQLRRPYKALSPDICMLCMEQGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 1841

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                + +     G        +LW  A  AIL  +W ERN R+F + + +    ++  H 
Sbjct: 1842 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHF 1901

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W S SK FK   +  I+++W A
Sbjct: 1902 LASLWVSCSKVFKGIPLNVIHLDWLA 1927

[Close]
BLAST of Cla022066 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1718 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1777

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1778 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRF 1837

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1838 LASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]
BLAST of Cla022066 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-14
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 1 

Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 536 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 595

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               +       G        +LW +A  A+   +W ERN R+F + A +    +++   
Sbjct: 596 RSISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRF 655

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 656 LASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]
BLAST of Cla022066 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-14
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            +LN   +LQ + P   LSP++C LC++  E + HLF  C   K  W RLF    + WV  
Sbjct: 1158 KLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSP 1217

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                +       G        +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 1218 RSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICF 1277

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W   SK FK   +  + ++W A
Sbjct: 1278 LASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]
BLAST of Cla022066 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 85.5 bits (210), Expect = 9.0e-14
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5    RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
            ++N   +LQ + P   LSP +C LC+E  E + HLF  C      W RLF    + WV  
Sbjct: 1782 KVNTNDMLQLRRPYKALSPDICMLCMEQGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPP 1841

Query: 65   MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
                + +     G        +LW  A  AIL  +W ERN R+F + + +    ++  H 
Sbjct: 1842 RSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHF 1901

Query: 125  NASSWCSLSKAFKDFSIQDININWKA 151
             AS W S SK FK   +  I+++W A
Sbjct: 1902 LASLWVSCSKVFKGIPLNVIHLDWLA 1927

[Close]
BLAST of Cla022066 vs. NCBI nr
Match: gi|147811390|emb|CAN65485.1| (hypothetical protein VITISV_029475 [Vitis vinifera])

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1 

Query: 5   RLNCASVLQSKLPSHCLSPHVCHLCLEDHEDLQHLFFGCKFAKNCWFRLFDSFNLSWVFS 64
           ++N   +LQ K P   LSP +C LC++  E + HLF  C      W+RLF      WV  
Sbjct: 56  KVNTNDLLQLKRPHKALSPDICKLCMKHGETVDHLFLHCSLMMGLWYRLFQLAKTDWVPP 115

Query: 65  MEFKENVLRLLLGPKLKLTPKLLWINAVKAILSEIWFERNQRVFHNIASSWSIRFETTHL 124
               + +     G +      +LW +A  A++  +W ERN R+F + A +    +++   
Sbjct: 116 RSISDMLSTNFNGFESSKRGIVLWQDACIALMWVVWXERNARIFEDKARNSEYLWDSISF 175

Query: 125 NASSWCSLSKAFKDFSIQDININWKA 151
            AS W   SK FK   +  + ++W A
Sbjct: 176 LASLWALCSKVFKGIPLNVLQLDWLA 201

The following BLAST results are available for this feature:
BLAST of Cla022066 vs. TrEMBL
Match NameE-valueIdentityDescription
F6H108_VITVI1.6e-1430.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=... [more]
A5C377_VITVI1.6e-1430.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1[more]
A5BKH7_VITVI3.7e-1430.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1[more]
A5BTG1_VITVI3.7e-1430.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1[more]
A5BQD9_VITVI6.3e-1432.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1[more]
BLAST of Cla022066 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147802674|emb|CAN62051.1|2.4e-1430.14hypothetical protein VITISV_016641 [Vitis vinifera][more]
gi|147792407|emb|CAN63585.1|5.3e-1430.14hypothetical protein VITISV_026806 [Vitis vinifera][more]
gi|147815645|emb|CAN61757.1|5.3e-1430.14hypothetical protein VITISV_030741 [Vitis vinifera][more]
gi|147857332|emb|CAN79190.1|9.0e-1432.19hypothetical protein VITISV_000232 [Vitis vinifera][more]
gi|147811390|emb|CAN65485.1|1.5e-1329.45hypothetical protein VITISV_029475 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU09566watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU39795watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022066Cla022066.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU09566WMU09566transcribed_cluster
WMU39795WMU39795transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..50
score: 1.