WMU09566 (transcribed_cluster) Watermelon (97103) v1

NameWMU09566
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr8 : 20063017 .. 20075442 (-)
Sequence length373
The following sequences are available for this feature:

transcribed_cluster sequence

AGAATTATGCTGATAAGCAGGTTTATTTGTTGTAAAATTTCTAATTTTGGTAACGTTCAATGAAAATTGTTAAACCAAATGGGTGGTTTGTTTCAGGAATATCATTGTTGGCATGACAACTGATTTCATCTGTAAGTTCTTGGAAAACCATCAGCAGAATTTTCCACTATGTTGCAAACTGAATGGCATTCCATTATTCTGGTGGCATTTTATAGAGGCCTCACAGTTCCTCTGCATACTTTCTTTGCGTTCAAGGGCCATCATGATCTTCAGAGTAATTGAGATCGACCACCAAGTACATCAGATCTACCTCTGAAAATTCCCTCCTGGTGTGATCTGGAAGGTGAGCCGGGAGAGAGGAGGGAAGCAGTTT
BLAST of WMU09566 vs. TrEMBL
Match: A0A0A0KDW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399780 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = -2

Query: 4   MMALERKESMQRNCEASIKCHQNNGMPFSLQHSGKFC*WFSKNLQMKSVVMPTMIFLKQT 63
           MMALERKESMQRNCEASIKC QNNGMPFSLQHSG     F +     S      I   +T
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDI--PET 60

Query: 64  THLV*QFSLNVTKIRNFTTNKPAYQHN 123
            H       N  +  N   NKPAYQHN
Sbjct: 61  NH---PLVNNFIERPNEFHNKPAYQHN 82

Query: 124 183
           
Sbjct: 121 82

Query: 184 243
           
Sbjct: 181 82

Query: 244 265
           
Sbjct: 241 82

BLAST of WMU09566 vs. NCBI nr
Match: gi|659089191|ref|XP_008445374.1| (PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = -2

Query: 4   MMALERKESMQRNCEASIKCHQNNGMPFSLQHSGKFC*WFSKNLQMKSVVMPTMIFLKQT 63
           MMALERKESMQRNCEASIKC QNNGMPFSLQHSG     F +     S      I   +T
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDI--PET 60

Query: 64  THLV*QFSLNVTKIRNFTTNKPAYQHN 123
            H       N  +  N   NKPAYQHN
Sbjct: 61  NH---PLVNNFIERPNEFHNKPAYQHN 82

Query: 124 183
           
Sbjct: 121 82

Query: 184 243
           
Sbjct: 181 82

Query: 244 265
           
Sbjct: 241 82

BLAST of WMU09566 vs. NCBI nr
Match: gi|449458085|ref|XP_004146778.1| (PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = -2

Query: 4   MMALERKESMQRNCEASIKCHQNNGMPFSLQHSGKFC*WFSKNLQMKSVVMPTMIFLKQT 63
           MMALERKESMQRNCEASIKC QNNGMPFSLQHSG     F +     S      I   +T
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDI--PET 60

Query: 64  THLV*QFSLNVTKIRNFTTNKPAYQHN 123
            H       N  +  N   NKPAYQHN
Sbjct: 61  NH---PLVNNFIERPNEFHNKPAYQHN 82

Query: 124 183
           
Sbjct: 121 82

Query: 184 243
           
Sbjct: 181 82

Query: 244 265
           
Sbjct: 241 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KDW9_CUCSA1.8e-1155.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659089191|ref|XP_008445374.1|2.5e-1155.17PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis melo][more]
gi|449458085|ref|XP_004146778.1|2.5e-1155.17PREDICTED: 3'-5' exoribonuclease 1-like [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla022066Cla022066gene
Cla022067Cla022067gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0125145S1_0125145EST
S2_0060001S2_0060001EST